RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TBC1D23Q9NUY8 699 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 INTS7Q9NVH2 962 aaKnown RBP5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF639Q9UID6 485 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF225Q9UK10 706 aa5.4□□□□□ -1.55
LIMA1-212ENST00000552491 SMIM35A0A1B0GVV1 85 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 DYTNA2CJ06 578 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 MROH6A6NGR9 719 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 DYNC1LI2O43237 492 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 LDB2O43679 373 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 COQ9O75208 318 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 BAIAP3O94812 1187 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 MATN4O95460 622 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 CPNE6O95741 557 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 MOCS2O96007 188 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 GPIP06744 558 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 HAPLN1P10915 354 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 FDXRP22570 491 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SLC26A3P40879 764 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 RXRGP48443 463 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SERPINH1P50454 418 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 HLCSP50747 726 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 C21orf59P57076 290 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 OR4D2P58180 307 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 UFM1P61960 85 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 ADAM17P78536 824 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PIGFQ07326 219 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 GRSF1Q12849 480 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 TRAF2Q12933 501 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 ATP1A4Q13733 1029 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SELPLGQ14242 412 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 GEN1Q17RS7 908 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SPATS1Q496A3 300 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SLC44A4Q53GD3 710 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SETMARQ53H47 684 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PRAMEF19Q5SWL8 479 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 OTUD3Q5T2D3 398 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 UGT3A1Q6NUS8 523 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 LRRTM3Q86VH5 581 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF354CQ86Y25 554 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PTRH1Q86Y79 214 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 DCP1BQ8IZD4 617 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PDPRQ8NCN5 879 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PAPD5Q8NDF8 572 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 GABPB2Q8TAK5 448 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 CALML6Q8TD86 181 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SLC16A10Q8TF71 515 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 RSPH1Q8WYR4 309 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 LPPQ93052 612 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 BIRC7Q96CA5 298 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 IMP4Q96G21 291 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 CNDP2Q96KP4 475 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 MUS81Q96NY9 551 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 ATOH8Q96SQ7 321 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 GAD1Q99259 594 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 NEURL2Q9BR09 285 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 MTG1Q9BT17 334 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 YTHDF1Q9BYJ9 559 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SLC25A51Q9H1U9 297 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 NANOGQ9H9S0 305 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 CSNK1G1Q9HCP0 422 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 RGS18Q9NS28 235 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 OSER1Q9NX31 292 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SELENONQ9NZV5 590 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 MED16Q9Y2X0 877 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 COQ6Q9Y2Z9 468 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PTPRDP23468 1912 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 A0A1W2PP18 115 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 CASTOR2A6NHX0 329 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 RRN3P2A6NIE6 340 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 E9PAM4 449 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SNAP91O60641 907 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SULT1C4O75897 302 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 RSL1D1O76021 490 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 CNTN5O94779 1100 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 C1RP00736 705 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 ATXN1LP0C7T5 689 aaKnown RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PIRTP0C851 137 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 FCGR1AP12314 374 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 IL7RP16871 459 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF12P17014 697 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 ZNF37AP17032 561 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-212ENST00000552491 LBPP18428 481 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 NR4A1P22736 598 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 CCR1P32246 355 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 IST1P53990 364 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PRR20EP86478 221 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PRR20CP86479 221 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PRR20DP86480 221 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PRR20BP86481 221 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 PRR20AP86496 221 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 AQP6Q13520 282 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 NFYCQ13952 458 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SPIDRQ14159 915 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 RCAN2Q14206 197 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 TIGD5Q53EQ6 642 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 SIRPB2Q5JXA9 342 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 LDLRAP1Q5SW96 308 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 CCNYL2Q5T2Q4 361 aa5.39□□□□□ -1.55
LIMA1-212ENST00000552491 TWF2Q6IBS0 349 aaKnown RBP5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms