RNA–Protein interactions for RNA: ENST00000550283.1

RAB5B-208, Transcript of RAB5B, member RAS oncogene family, human

TSL 3

Gene RAB5B, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5B-208	ENST00000550283	RGSL1	A5PLK6	1076 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283		H3BM21	787 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	PGRMC1	O00264	195 aa	Known RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	SGTA	O43765	313 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	SUN1	O94901	812 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	CKMT1A	P12532	417 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	CTSE	P14091	401 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	ACP1	P24666	158 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	NFKBIA	P25963	317 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	STIP1	P31948	543 aa	Known RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	COIL	P38432	576 aa	Predicted RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	MAZ	P56270	477 aa	Known RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	CRADD	P78560	199 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	B4GALNT1	Q00973	533 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	PRPSAP1	Q14558	356 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	TAF1A	Q15573	450 aa	Predicted RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	PLA2G4E	Q3MJ16	856 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	C6orf132	Q5T0Z8	1188 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	PAPD7	Q5XG87	772 aa	Known RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	CCDC70	Q6NSX1	233 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	SLC30A9	Q6PML9	568 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	SPNS2	Q8IVW8	549 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	AGGF1	Q8N302	714 aa	eCLIP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	FAM181A	Q8N9Y4	354 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	ACTRT1	Q8TDG2	376 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	BTN2A2	Q8WVV5	523 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	MAGOHB	Q96A72	148 aa	Known RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	CAPZA3	Q96KX2	299 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	TBATA	Q96M53	351 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	PLEKHG4B	Q96PX9	1271 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	TRIM56	Q9BRZ2	755 aa	Known RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	LRRC40	Q9H9A6	602 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	CASS4	Q9NQ75	786 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	GULP1	Q9UBP9	304 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	GPR34	Q9UPC5	381 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	KCNK6	Q9Y257	313 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	GPSM3	Q9Y4H4	160 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	PTPRB	P23467	1997 aa		11.1	□□□□□ -0.63
RAB5B-208	ENST00000550283	ASXL3	Q9C0F0	2248 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	TRBV23OR9-2	A0A075B6M9	112 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	PRAMEF33	A0A0G2JMD5	474 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	CPED1	A4D0V7	1026 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	PMS2P1	A4D2B8	440 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	PRR19	A6NJB7	356 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283		B4DGG1	531 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	TPP1	O14773	563 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	TMEM63A	O94886	807 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	SLC25A14	O95258	325 aa	Predicted RBP	11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	ASMTL	O95671	621 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	APRT	P07741	180 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	ANXA6	P08133	673 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	LPO	P22079	712 aa	Predicted RBP	11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	SPAM1	P38567	509 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	CTSC	P53634	463 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	MRPS25	P82663	173 aa	Known RBP	11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	INSM1	Q01101	510 aa	Predicted RBP	11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	SEPT6	Q14141	434 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	GPRC6A	Q5T6X5	926 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	ZCCHC8	Q6NZY4	707 aa	Known RBP	11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	OGFOD3	Q6PK18	319 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	CRTC3	Q6UUV7	619 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	TAF8	Q7Z7C8	310 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	C11orf96	Q7Z7L8	435 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	RAVER1	Q8IY67	606 aa	Known RBP	11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	PIANP	Q8IYJ0	282 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	RASGEF1A	Q8N9B8	481 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	FAM46D	Q8NEK8	389 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	GPR156	Q8NFN8	814 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	IFI44	Q8TCB0	444 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	BRSK1	Q8TDC3	778 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	UBE2Q2	Q8WVN8	375 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	MS4A3	Q96HJ5	214 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	OR2M4	Q96R27	311 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	DDX47	Q9H0S4	455 aa	Known RBP	11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	TRABD	Q9H4I3	376 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	KCND1	Q9NSA2	647 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	KCTD5	Q9NXV2	234 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	HACD3	Q9P035	362 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	TAAR2	Q9P1P5	351 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	ZNHIT2	Q9UHR6	403 aa		11.09	□□□□□ -0.63
RAB5B-208	ENST00000550283	GLYATL1P3	A0A0U1RQE8	302 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283		A0A1W2PNU3	283 aa	Predicted RBP	11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283		A6NCN8	305 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	NEMP2	A6NFY4	417 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	MROH6	A6NGR9	719 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	CHUK	O15111	745 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	STX7	O15400	261 aa	Known RBP	11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	NUAK1	O60285	661 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	AVIL	O75366	819 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	RFPL3	O75679	317 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	PRAMEF1	O95521	474 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	KRT14	P02533	472 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	ACP5	P13686	325 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	KEL	P23276	732 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	FDFT1	P37268	417 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	PTGIR	P43119	386 aa		11.08	□□□□□ -0.64
RAB5B-208	ENST00000550283	BLK	P51451	505 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms