RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 TNFRSF8P28908 595 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 C21orf59P57076 290 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 NXPH1P58417 271 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 KIAA1024LP59773 190 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 VSNL1P62760 191 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 BNC1Q01954 994 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 NHLH1Q02575 133 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 LONRF1Q17RB8 773 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 TRIM61Q5EBN2 209 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 GPRC6AQ5T6X5 926 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 STEAP4Q687X5 459 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 DOK6Q6PKX4 331 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 TAS2R42Q7RTR8 314 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 RABEPKQ7Z6M1 372 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 SPATS2Q86XZ4 545 aaKnown RBP21.01■□□□□ 0.95
VPS29-206ENST00000549578 PHYKPLQ8IUZ5 450 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 GPR161Q8N6U8 529 aaKnown RBP21.01■□□□□ 0.95
VPS29-206ENST00000549578 GDAP1Q8TB36 358 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 RUBCNQ92622 972 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 SKA1Q96BD8 255 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 CATSPERZQ9NTU4 200 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 MARCH4Q9P2E8 410 aaPredicted RBP21.01■□□□□ 0.95
VPS29-206ENST00000549578 ANKRD6Q9Y2G4 727 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 TMEM98Q9Y2Y6 226 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.01■□□□□ 0.95
VPS29-206ENST00000549578 CACNA1EQ15878 2313 aa21.01■□□□□ 0.95
VPS29-206ENST00000549578 TMEM202A6NGA9 273 aa21■□□□□ 0.95
VPS29-206ENST00000549578 AGAP14A8MT82 685 aa21■□□□□ 0.95
VPS29-206ENST00000549578 HOXC4P09017 264 aaPredicted RBP21■□□□□ 0.95
VPS29-206ENST00000549578 FAM153BP0C7A2 387 aa21■□□□□ 0.95
VPS29-206ENST00000549578 HTR1BP28222 390 aa21■□□□□ 0.95
VPS29-206ENST00000549578 SEMA3AQ14563 771 aa21■□□□□ 0.95
VPS29-206ENST00000549578 KIF19Q2TAC6 998 aa21■□□□□ 0.95
VPS29-206ENST00000549578 FAM153CQ494X1 144 aa21■□□□□ 0.95
VPS29-206ENST00000549578 GPR33Q49SQ1 333 aa21■□□□□ 0.95
VPS29-206ENST00000549578 KHDC1Q4VXA5 237 aaKnown RBP21■□□□□ 0.95
VPS29-206ENST00000549578 PLA2G2CQ5R387 149 aa21■□□□□ 0.95
VPS29-206ENST00000549578 KCTD16Q68DU8 428 aa21■□□□□ 0.95
VPS29-206ENST00000549578 TCEAL6Q6IPX3 200 aa21■□□□□ 0.95
VPS29-206ENST00000549578 PALM2Q8IXS6 379 aa21■□□□□ 0.95
VPS29-206ENST00000549578 NXPE1Q8N323 547 aa21■□□□□ 0.95
VPS29-206ENST00000549578 TCEAL3Q969E4 200 aa21■□□□□ 0.95
VPS29-206ENST00000549578 CAPN10Q9HC96 672 aa21■□□□□ 0.95
VPS29-206ENST00000549578 C20orf96Q9NUD7 363 aaPredicted RBP21■□□□□ 0.95
VPS29-206ENST00000549578 TP53BP1Q12888 1972 aaPredicted RBP21■□□□□ 0.95
VPS29-206ENST00000549578 TRBV5-4A0A0C4DH59 114 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 SPTY2D1-AS1A0A0U1RR47 76 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 CD3EAPO15446 510 aaKnown RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 MAGEC1O60732 1142 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 SSTR1P30872 391 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 POLD2P49005 469 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 FZD2Q14332 565 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 FASTKD1Q53R41 847 aaKnown RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 TRMT10BQ6PF06 316 aaKnown RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 SLC23A3Q6PIS1 610 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 ENPP7Q6UWV6 458 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 MACC1Q6ZN28 852 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 LDB1Q86U70 411 aaPredicted RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 SERPINA9Q86WD7 417 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 OTUD6BQ8N6M0 293 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 EIF1ADQ8N9N8 165 aaKnown RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 DDHD1Q8NEL9 900 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 ULK4Q96C45 1275 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 CCDC97Q96F63 343 aaPredicted RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 SGSM3Q96HU1 749 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 WDR92Q96MX6 357 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 TSPYL1Q9H0U9 437 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 CAAP1Q9H8G2 361 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 NCDNQ9UBB6 729 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 PNMA8BQ9ULN7 279 aaPredicted RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 SLC6A14Q9UN76 642 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 SNX11Q9Y5W9 270 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 PROB1E7EW31 1015 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 ASMTLO95671 621 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 ERVK-10P10266 1014 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 ACRV1P26436 265 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 GRIK2Q13002 908 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 PTK2BQ14289 1009 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 DBN1Q16643 649 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 CCNI2Q6ZMN8 369 aaPredicted RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 CEP128Q6ZU80 1094 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 KCNMB4Q86W47 210 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 DCP2Q8IU60 420 aaKnown RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 FGF22Q9HCT0 170 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 MRPL40Q9NQ50 206 aaKnown RBP20.99■□□□□ 0.95
VPS29-206ENST00000549578 OTOGLQ3ZCN5 2332 aa20.99■□□□□ 0.95
VPS29-206ENST00000549578 RALGAPA1Q6GYQ0 2036 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 CEACAM5P06731 702 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 KELP23276 732 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 AKT1P31749 480 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 CTSKP43235 329 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 GPX6P59796 221 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 IRX4P78413 519 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 SPEM2Q0P670 501 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 THOC5Q13769 683 aaKnown RBP20.98■□□□□ 0.95
VPS29-206ENST00000549578 HSP90AA5PQ58FG0 334 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 ZNF542PQ5EBM4 170 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 LDLRAP1Q5SW96 308 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 PRAMEF14Q5SWL7 426 aa20.98■□□□□ 0.95
VPS29-206ENST00000549578 UBAP2Q5T6F2 1119 aaKnown RBP20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms