RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TXNL4AP83876 142 aaKnown RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 C16orf72Q14CZ0 275 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 GLT6D1Q7Z4J2 308 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 KLHDC8BQ8IXV7 354 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 ZNF683Q8IZ20 524 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 PAF1Q8N7H5 531 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 KCTD14Q9BQ13 255 aaPredicted RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 GPR62Q9BZJ7 368 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 POLR1EQ9GZS1 481 aaKnown RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 MRM3Q9HC36 420 aaKnown RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 PNPLA3Q9NST1 481 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 ZNF236Q9UL36 1845 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 PRAMEF12O95522 483 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 MYCP01106 439 aaPredicted RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 ELNP15502 786 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 FASP25445 335 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 SLC6A4P31645 630 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 HK3P52790 923 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 MERTKQ12866 999 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 PMS2P3Q13401 168 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 TBC1D25Q3MII6 688 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 VARS2Q5ST30 1063 aaKnown RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 TMEM26Q6ZUK4 368 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 MILR1Q7Z6M3 343 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 ZIC5Q96T25 663 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 TBCDQ9BTW9 1192 aa14.94□□□□□ -0.02
USP28-214ENST00000545540 RPF2Q9H7B2 306 aaKnown RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 CCM2LQ9NUG4 571 aaPredicted RBP14.94□□□□□ -0.02
USP28-214ENST00000545540 C1RP00736 705 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 CTPS1P17812 591 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 CD247P20963 164 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 ZNF33AQ06730 810 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 SERINC3Q13530 473 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 GPR162Q16538 588 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 CLLU1OSQ5K130 101 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 ADGRG5Q8IZF4 528 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 CLHC1Q8NHS4 586 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 MTFMTQ96DP5 389 aaKnown RBP14.93□□□□□ -0.02
USP28-214ENST00000545540 L3HYPDHQ96EM0 354 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 A0A0J9YVX5 310 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 A0A1W2PPW3 197 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 MAN1A2O60476 641 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 SYNCRIPO60506 623 aaKnown RBP14.93□□□□□ -0.02
USP28-214ENST00000545540 CYBBP04839 570 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 CYP11A1P05108 521 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 ZNF135P52742 658 aaPredicted RBP14.93□□□□□ -0.02
USP28-214ENST00000545540 STC1P52823 247 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 ADARP55265 1226 aaKnown RBP14.93□□□□□ -0.02
USP28-214ENST00000545540 KCNK10P57789 538 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 SLC44A4Q53GD3 710 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 PPP4R4Q6NUP7 873 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 DENND1CQ8IV53 801 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 FAM86B1Q8N7N1 296 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 DDI1Q8WTU0 396 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 TRIB2Q92519 343 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 FUBP1Q96AE4 644 aaKnown RBP14.93□□□□□ -0.02
USP28-214ENST00000545540 GPATCH1Q9BRR8 931 aaKnown RBP14.93□□□□□ -0.02
USP28-214ENST00000545540 AARSD1Q9BTE6 412 aaKnown RBP14.93□□□□□ -0.02
USP28-214ENST00000545540 POLR1BQ9H9Y6 1135 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 TMEM248Q9NWD8 314 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 SARDHQ9UL12 918 aa14.93□□□□□ -0.02
USP28-214ENST00000545540 LOC285095A0A1B0GVY8 99 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 RPP40O75818 363 aaKnown RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 ATE1O95260 518 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 SERPINF2P08697 491 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 C12orf43Q96C57 262 aaKnown RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 TDRD1Q9BXT4 1180 aaKnown RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 SMPD4Q9NXE4 827 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 FADS3Q9Y5Q0 445 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 ZFP37Q9Y6Q3 630 aaPredicted RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 CCDC154A6NI56 674 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 TLR5O60602 858 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 GJB5O95377 273 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 POLD2P49005 469 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 PSMD7P51665 324 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 TNK2Q07912 1038 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 TRAP1Q12931 704 aaKnown RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 MAPRE1Q15691 268 aaKnown RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 FGD3Q5JSP0 725 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 CST9Q5W186 159 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 ANKS6Q68DC2 871 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 C8orf82Q6P1X6 216 aaPredicted RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 CLDN19Q8N6F1 224 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 LINGO1Q96FE5 620 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 HAUS8Q9BT25 410 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 EPB41L1Q9H4G0 881 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 AASSQ9UDR5 926 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 FAF1Q9UNN5 650 aaPredicted RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 OAS3Q9Y6K5 1087 aaKnown RBP14.92□□□□□ -0.02
USP28-214ENST00000545540 KRT87PA6NCN2 255 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 GIPC1O14908 333 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 NFKBIAP25963 317 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 NANOGP8Q6NSW7 305 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 BLOC1S3Q6QNY0 202 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 GPR141Q7Z602 305 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 TMEM125Q96AQ2 219 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 ITCHQ96J02 903 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 PLEKHG4BQ96PX9 1271 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 NANOGQ9H9S0 305 aa14.92□□□□□ -0.02
USP28-214ENST00000545540 SNAP91O60641 907 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms