RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	POLD2	P49005	469 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	OVGP1	Q12889	678 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	NFATC4	Q14934	902 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	FAM153C	Q494X1	144 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	HSP90AA5P	Q58FG0	334 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	AARS2	Q5JTZ9	985 aa	Known RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZNF648	Q5T619	568 aa	Predicted RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	GPRC6A	Q5T6X5	926 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	LYPLAL1	Q5VWZ2	237 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	WDR93	Q6P2C0	686 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	MARK2	Q7KZI7	788 aa	Known RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	LDB1	Q86U70	411 aa	Predicted RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	IQCH	Q86VS3	1027 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	DCP2	Q8IU60	420 aa	Known RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	UNC5B	Q8IZJ1	945 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	NXPE1	Q8N323	547 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	C1orf216	Q8TAB5	229 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	CALML6	Q8TD86	181 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	VPS35	Q96QK1	796 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	COPS8	Q99627	209 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	FAM167B	Q9BTA0	163 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	LGR4	Q9BXB1	951 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	TEX101	Q9BY14	249 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	NINJ2	Q9NZG7	142 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	NCDN	Q9UBB6	729 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	CNOT6	Q9ULM6	557 aa	Known RBP	10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	SLC6A14	Q9UN76	642 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	PCDHGA5	Q9Y5G8	931 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	SDK1	Q7Z5N4	2213 aa		10.07	□□□□□ -0.8
CPSF7-221	ENST00000543545	KHNYN	O15037	678 aa	Known RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	SPAG6	O75602	509 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	CDK14	O94921	469 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	HOXC4	P09017	264 aa	Predicted RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	GSTA2	P09210	222 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	MYBL2	P10244	700 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ACRV1	P26436	265 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ARNT	P27540	789 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	FOXN2	P32314	431 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	STX2	P32856	288 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	HOXD12	P35452	270 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	NBL1	P41271	181 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	TTPA	P49638	278 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ATXN3	P54252	364 aa	Predicted RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	PMS2	P54278	862 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	KIAA1024L	P59773	190 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	PPARD	Q03181	441 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	MGAT5	Q09328	741 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	TMEM115	Q12893	351 aa	Predicted RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	CBLB	Q13191	982 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	DBN1	Q16643	649 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	KIF19	Q2TAC6	998 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZNF542P	Q5EBM4	170 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	TRIM61	Q5EBN2	209 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	PRAMEF14	Q5SWL7	426 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	STEAP4	Q687X5	459 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZNF470	Q6ECI4	717 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	PSAPL1	Q6NUJ1	521 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	TRMT10B	Q6PF06	316 aa	Known RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	CERS6	Q6ZMG9	384 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	TRMT10C	Q7L0Y3	403 aa	Known RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	DET1	Q7L5Y6	550 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	HID1	Q8IV36	788 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	CTAGE3P	Q8IX95	158 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	LMNTD2	Q8IXW0	634 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	PIANP	Q8IYJ0	282 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	PNPLA1	Q8N8W4	532 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	SUMF1	Q8NBK3	374 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	UHMK1	Q8TAS1	419 aa	Known RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	HEXDC	Q8WVB3	486 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	CDKL2	Q92772	493 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	CERS2	Q96G23	380 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	WDR92	Q96MX6	357 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	NUSAP1	Q9BXS6	441 aa	Known RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZCCHC2	Q9C0B9	1178 aa	Known RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	OR2AG1	Q9H205	316 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	CDC42EP4	Q9H3Q1	356 aa	Known RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	SMOC1	Q9H4F8	434 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	LRRC4C	Q9HCJ2	640 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	TRIM39	Q9HCM9	518 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	SMOX	Q9NWM0	555 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZDHHC3	Q9NYG2	299 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZFAT	Q9P243	1243 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	MARCH4	Q9P2E8	410 aa	Predicted RBP	10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	KL	Q9UEF7	1012 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZNHIT2	Q9UHR6	403 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	TMPRSS11E	Q9UL52	423 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	ANKRD6	Q9Y2G4	727 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	GPSM3	Q9Y4H4	160 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	GON4L	Q3T8J9	2241 aa		10.06	□□□□□ -0.8
CPSF7-221	ENST00000543545	SPTY2D1-AS1	A0A0U1RR47	76 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	UBA6	A0AVT1	1052 aa	Predicted RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	TMEM202	A6NGA9	273 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	PATE3	B3GLJ2	98 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	SCAMP1	O15126	338 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	VEGFD	O43915	354 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	TNF	P01375	233 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	SYP	P08247	313 aa		10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	ZNF7	P17097	686 aa	Predicted RBP	10.05	□□□□□ -0.8
CPSF7-221	ENST00000543545	CA5A	P35218	305 aa		10.05	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms