RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CCT8P50990 548 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 SPEM2Q0P670 501 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 GRIK2Q13002 908 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 LRP8Q14114 963 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 FRG1Q14331 258 aaKnown RBP17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 ITIH4Q14624 930 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 BBS9Q3SYG4 887 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 CCDC38Q502W7 563 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 SPANXN3Q5MJ09 141 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 RNF187Q5TA31 235 aaPredicted RBP17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 ZNF449Q6P9G9 518 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 FAM151BQ6UXP7 276 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 FSTL5Q8N475 847 aaPredicted RBP17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 PLA2G15Q8NCC3 412 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 OR6P1Q8NGX9 317 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 GDAP1Q8TB36 358 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 DCUN1D1Q96GG9 259 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 VPS37BQ9H9H4 285 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 GRHL1Q9NZI5 618 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 SLC17A4Q9Y2C5 497 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 OR1A2Q9Y585 309 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 DNMT3AQ9Y6K1 912 aaPredicted RBP17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 RPS6KL1Q9Y6S9 549 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 GON4LQ3T8J9 2241 aa17.37■□□□□ 0.37
CLSTN3-210ENST00000540931 CACNA1EQ15878 2313 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 H0Y8X5 98 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 AVILO75366 819 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 SOD1P00441 154 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 NME1P15531 152 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 ENGP17813 658 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 MSH3P20585 1137 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 SRP54P61011 504 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 IRX4P78413 519 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 XIAPP98170 497 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 SLC7A5Q01650 507 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 THOC5Q13769 683 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 HLTFQ14527 1009 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 ELOCQ15369 112 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 CHRNA6Q15825 494 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 LONRF1Q17RB8 773 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 KIF19Q2TAC6 998 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 AASDHQ4L235 1098 aaPredicted RBP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 ANKRD20A4Q4UJ75 823 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 ATP13A5Q4VNC0 1218 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 ZRANB3Q5FWF4 1079 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 ENPP7Q6UWV6 458 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 PRR23CQ6ZRP0 262 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 CYS1Q717R9 158 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 OR13J1Q8NGT2 312 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 PYROXD1Q8WU10 500 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 HDAC10Q969S8 669 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 SCARF2Q96GP6 870 aaPredicted RBP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 COPS8Q99627 209 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 RTKNQ9BST9 563 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 PARD6AQ9NPB6 346 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 TRNAU1APQ9NX07 287 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 SPASTQ9UBP0 616 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 ZC3H7BQ9UGR2 993 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 CDV3Q9UKY7 258 aaKnown RBP17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 GPR34Q9UPC5 381 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 CSNK1G3Q9Y6M4 447 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 FAM169AQ9Y6X4 670 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 RALGAPA1Q6GYQ0 2036 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 PI4KAP42356 2102 aa17.36■□□□□ 0.37
CLSTN3-210ENST00000540931 CHD8Q9HCK8 2581 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 MAP1BP46821 2468 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 TRBV5-4A0A0C4DH59 114 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 A0A0U1RQS6 177 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 BHMG1C9JSJ3 638 aaPredicted RBP17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 BUD23O43709 281 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 PCDHGA12O60330 932 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 AP2A2O94973 939 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 ASMTLO95671 621 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 CTSEP14091 401 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 VCLP18206 1134 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 NSG1P42857 185 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 HK3P52790 923 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 DHX9Q08211 1270 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 PDIA2Q13087 525 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 FZD2Q14332 565 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 SLMAPQ14BN4 828 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 HLA-BQ31612 363 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 TAS2R42Q7RTR8 314 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 LRRC6Q86X45 466 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 NXPE1Q8N323 547 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 GPR150Q8NGU9 434 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 FBXO25Q8TCJ0 367 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 FAM167BQ9BTA0 163 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 TSSK1BQ9BXA7 367 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 GAREM1Q9H706 876 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 TMEM9BQ9NQ34 198 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 CATSPERZQ9NTU4 200 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 EVA1BQ9NVM1 165 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 DNAAF2Q9NVR5 837 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 DNAJC28Q9NX36 388 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 NSMCE4AQ9NXX6 385 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 FNDC3AQ9Y2H6 1198 aaKnown RBP17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 KCTD3Q9Y597 815 aa17.35■□□□□ 0.37
CLSTN3-210ENST00000540931 SNX11Q9Y5W9 270 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms