RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 CELA2BP08218 269 aaPredicted RBP12.89□□□□□ -0.35
CCDC42-202ENST00000539522 F7P08709 466 aaPredicted RBP12.89□□□□□ -0.35
CCDC42-202ENST00000539522 GIMD1P0DJR0 217 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 FOXN2P32314 431 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 GPR1P46091 355 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 RABIFP47224 123 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 KIAA1024LP59773 190 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 YPEL5P62699 121 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 SARNPP82979 210 aaKnown RBP12.89□□□□□ -0.35
CCDC42-202ENST00000539522 CASP8Q14790 479 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 NFATC4Q14934 902 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 ALG11Q2TAA5 492 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 HLA-BQ31612 363 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 HP1BP3Q5SSJ5 553 aaPredicted RBP12.89□□□□□ -0.35
CCDC42-202ENST00000539522 PSAPL1Q6NUJ1 521 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 PRR23CQ6ZRP0 262 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 TMEM135Q86UB9 458 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 CEP76Q8TAP6 659 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 OR1E3Q8WZA6 343 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 PDXPQ96GD0 296 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 SCARF2Q96GP6 870 aaPredicted RBP12.89□□□□□ -0.35
CCDC42-202ENST00000539522 VPS35Q96QK1 796 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 C1QTNF7Q9BXJ2 289 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 VIPAS39Q9H9C1 493 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 MRM3Q9HC36 420 aaKnown RBP12.89□□□□□ -0.35
CCDC42-202ENST00000539522 XAB2Q9HCS7 855 aaKnown RBP12.89□□□□□ -0.35
CCDC42-202ENST00000539522 IL1RAPL1Q9NZN1 696 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 MARCH4Q9P2E8 410 aaPredicted RBP12.89□□□□□ -0.35
CCDC42-202ENST00000539522 NCDNQ9UBB6 729 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 SUSD2Q9UGT4 822 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 GMEB2Q9UKD1 530 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 TMEM98Q9Y2Y6 226 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 TEX264Q9Y6I9 313 aa12.89□□□□□ -0.35
CCDC42-202ENST00000539522 SDR42E2A6NKP2 422 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 PRR5-ARHGAP8B1AHC4 643 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 MAP2K7O14733 419 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 KHNYNO15037 678 aaKnown RBP12.88□□□□□ -0.35
CCDC42-202ENST00000539522 SCAMP1O15126 338 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 EIF3HO15372 352 aaKnown RBP eCLIP12.88□□□□□ -0.35
CCDC42-202ENST00000539522 DNAJC6O75061 913 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 MTX2O75431 263 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 PRAMEF1O95521 474 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 MYCLP1P12525 358 aaPredicted RBP12.88□□□□□ -0.35
CCDC42-202ENST00000539522 GNSP15586 552 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 MC4RP32245 332 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 OVGP1Q12889 678 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 NFATC2Q13469 925 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 SMAD1Q15797 465 aaKnown RBP12.88□□□□□ -0.35
CCDC42-202ENST00000539522 MACC1Q6ZN28 852 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 ADGRG6Q86SQ4 1221 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 RELL1Q8IUW5 271 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 RBFAQ8N0V3 343 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 BTN2A2Q8WVV5 523 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 GLYATL1Q969I3 302 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 HDAC10Q969S8 669 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 HIC2Q96JB3 615 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 ZSCAN5AQ9BUG6 496 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 SPATA16Q9BXB7 569 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 TXLNGYQ9BZA5 131 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 WDR26Q9H7D7 661 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 SMOXQ9NWM0 555 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 ZNF446Q9NWS9 450 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 BFARQ9NZS9 450 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 SLC17A4Q9Y2C5 497 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 PKP3Q9Y446 797 aa12.88□□□□□ -0.35
CCDC42-202ENST00000539522 ZFC3H1O60293 1989 aaKnown RBP12.88□□□□□ -0.35
CCDC42-202ENST00000539522 FAM237BA0A1B0GVD1 139 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 AP3B1O00203 1094 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 TOR1BO14657 336 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 GFRA3O60609 400 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 GOT2P00505 430 aaKnown RBP12.87□□□□□ -0.35
CCDC42-202ENST00000539522 C1QAP02745 245 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 ELK3P41970 407 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 DPP6P42658 865 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 PMS2P54278 862 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 ARL4CP56559 192 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 IL9RQ01113 521 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 BNIP3Q12983 259 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 ANKRD20A4Q4UJ75 823 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 GPRC6AQ5T6X5 926 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 CENPUQ71F23 418 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 TRMT10CQ7L0Y3 403 aaKnown RBP12.87□□□□□ -0.35
CCDC42-202ENST00000539522 ZNF547Q8IVP9 402 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 SPNS2Q8IVW8 549 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 PPHLN1Q8NEY8 458 aaKnown RBP12.87□□□□□ -0.35
CCDC42-202ENST00000539522 ZNF398Q8TD17 642 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 TSACCQ96A04 125 aaPredicted RBP12.87□□□□□ -0.35
CCDC42-202ENST00000539522 EBNA1BP2Q99848 306 aaKnown RBP12.87□□□□□ -0.35
CCDC42-202ENST00000539522 BOCQ9BWV1 1114 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 PHACTR1Q9C0D0 580 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 CLPBQ9H078 707 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 CDH19Q9H159 772 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 ACBD3Q9H3P7 528 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 ERVMER34-1Q9H9K5 563 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 TM7SF3Q9NS93 570 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 UCKL1Q9NWZ5 548 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 KCTD5Q9NXV2 234 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 ATXN10Q9UBB4 475 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 PLEKHM1Q9Y4G2 1056 aa12.87□□□□□ -0.35
CCDC42-202ENST00000539522 IGLV3-16A0A075B6K0 115 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms