RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 HADHAP40939 763 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 KIR3DL1P43629 444 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CSNK1G2P78368 415 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 SLC6A3Q01959 620 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 BCL2L1Q07817 233 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 PAK1Q13153 545 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 LONRF1Q17RB8 773 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 DENND2CQ68D51 928 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 RPUSD3Q6P087 351 aaKnown RBP9.03□□□□□ -0.96
USP28-205ENST00000537706 FAM92BQ6ZTR7 304 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 TMEM26Q6ZUK4 368 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 FAM183BPQ6ZVS7 135 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 SLC26A9Q7LBE3 791 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 MRGPREQ86SM8 312 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 KMT5CQ86Y97 462 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CAMK1DQ8IU85 385 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 PHYKPLQ8IUZ5 450 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 TEKT4Q8WW24 435 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 VOPP1Q96AW1 172 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CLIP3Q96DZ5 547 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 EXOC2Q96KP1 924 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 C17orf62Q9BQA9 187 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 SLC7A5P2Q9GIP4 190 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 SEMA3GQ9NS98 782 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 TMEM248Q9NWD8 314 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 UBA2Q9UBT2 640 aaPredicted RBP9.03□□□□□ -0.96
USP28-205ENST00000537706 SLC30A1Q9Y6M5 507 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CELSR1Q9NYQ6 3014 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 A0A1W2PQ67 120 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 MEN1O00255 615 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 KLRC4O43908 158 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CALCAP01258 141 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 JCHAINP01591 159 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 AGXTP21549 392 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CA5AP35218 305 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CAPZBP47756 277 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 MEOX1P50221 254 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 UBE2HP62256 183 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 GPS2Q13227 327 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 SSPNQ14714 243 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 PRKD1Q15139 912 aaPredicted RBP9.03□□□□□ -0.96
USP28-205ENST00000537706 INAQ16352 499 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 HIF1AQ16665 826 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CYP2A13Q16696 494 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 KLHL35Q6PF15 583 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CLEC9AQ6UXN8 241 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 CHST15Q7LFX5 561 aaPredicted RBP9.03□□□□□ -0.96
USP28-205ENST00000537706 ZDHHC17Q8IUH5 632 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 ZNF397Q8NF99 534 aaPredicted RBP9.03□□□□□ -0.96
USP28-205ENST00000537706 DTD2Q96FN9 168 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 ENKD1Q9H0I2 346 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 DLL4Q9NR61 685 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 EPHA6Q9UF33 1036 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 TBC1D29Q9UFV1 150 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 TMEM98Q9Y2Y6 226 aa9.03□□□□□ -0.96
USP28-205ENST00000537706 A8MX80 341 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 PMPCBO75439 489 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 FOLR1P15328 257 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 SOX8P57073 446 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 TUBB4BP68371 445 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 TUBB2AQ13885 445 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 PCOLCEQ15113 449 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 AGAP7PQ5VUJ5 663 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 CES4AQ5XG92 561 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 DUS1LQ6P1R4 473 aaKnown RBP9.02□□□□□ -0.97
USP28-205ENST00000537706 RBM12BQ8IXT5 1001 aaKnown RBP9.02□□□□□ -0.97
USP28-205ENST00000537706 DSELQ8IZU8 1212 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 PELI3Q8N2H9 469 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 C1orf131Q8NDD1 294 aaKnown RBP9.02□□□□□ -0.97
USP28-205ENST00000537706 DNAJB8Q8NHS0 232 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 PTCD2Q8WV60 388 aaKnown RBP9.02□□□□□ -0.97
USP28-205ENST00000537706 TBC1D31Q96DN5 1066 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 SLC41A2Q96JW4 573 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 PCMTD1Q96MG8 357 aaPredicted RBP9.02□□□□□ -0.97
USP28-205ENST00000537706 AGAP4Q96P64 663 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 ZNF559Q9BR84 538 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 TUBB2BQ9BVA1 445 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 ANLNQ9NQW6 1124 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 OGFRQ9NZT2 677 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 LHX3Q9UBR4 397 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 GPN3Q9UHW5 284 aaPredicted RBP9.02□□□□□ -0.97
USP28-205ENST00000537706 PCDHGC4Q9Y5F7 938 aa9.02□□□□□ -0.97
USP28-205ENST00000537706 ARHGEF17Q96PE2 2063 aaPredicted RBP9.02□□□□□ -0.97
USP28-205ENST00000537706 PSMD11O00231 422 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 KIF1CO43896 1103 aaKnown RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 EML2O95834 649 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 MYL1P05976 194 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 XRCC1P18887 633 aaPredicted RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 GNA15P30679 374 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 VIPR1P32241 457 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 CSNK1DP48730 415 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 KRT85P78386 507 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 AIMP2Q13155 320 aaKnown RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 FOXD4L6Q3SYB3 417 aaPredicted RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 TMEM198Q66K66 360 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 OLFML1Q6UWY5 402 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 ADAMTSL4Q6UY14 1074 aa9.01□□□□□ -0.97
USP28-205ENST00000537706 FOXD4L3Q6VB84 417 aaPredicted RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 Q71RC1 249 aaPredicted RBP9.01□□□□□ -0.97
USP28-205ENST00000537706 SRLQ86TD4 932 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms