RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 FAM129BQ96TA1 746 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 CORO1BQ9BR76 489 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 MIR1-1HGQ9H1L0 117 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 ZNF221Q9UK13 617 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 NR2E3Q9Y5X4 410 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 A0A0J9YYE9 177 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 ELFN1P0C7U0 828 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 GOT1P17174 413 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 TGFB2P61812 414 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 CNTN2Q02246 1040 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 ATP13A4Q4VNC1 1196 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 MSANTD1Q6ZTZ1 278 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 UBE2R2Q712K3 238 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-209ENST00000537178 FAM35AQ86V20 835 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 HPS1Q92902 700 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 DIRAS2Q96HU8 199 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 B3GALT6Q96L58 329 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 CCDC115Q96NT0 180 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 TSSK3Q96PN8 268 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 GULP1Q9UBP9 304 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 GPN3Q9UHW5 284 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-209ENST00000537178 TCRBV9S1A1TA0A576 114 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 WFS1O76024 890 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 ADCYAP1R1P41586 468 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 SULT2A1Q06520 285 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 SCN1BQ07699 218 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 SCRN3Q0VDG4 424 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 CRTC3Q6UUV7 619 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 TRABD2AQ86V40 505 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 RBM4BQ9BQ04 359 aaKnown RBP10.59□□□□□ -0.71
CLIP1-209ENST00000537178 RBM4Q9BWF3 364 aaKnown RBP10.59□□□□□ -0.71
CLIP1-209ENST00000537178 FTHL17Q9BXU8 183 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 DHX33Q9H6R0 707 aaKnown RBP10.59□□□□□ -0.71
CLIP1-209ENST00000537178 SLCO1B3Q9NPD5 702 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 TAS2R14Q9NYV8 317 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 IFT80Q9P2H3 777 aaPredicted RBP10.59□□□□□ -0.71
CLIP1-209ENST00000537178 PCDHB1Q9Y5F3 818 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 WNK3Q9BYP7 1800 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 GATBO75879 557 aaKnown RBP10.59□□□□□ -0.71
CLIP1-209ENST00000537178 CCNE2O96020 404 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 C9P02748 559 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 PSMD5Q16401 504 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 NOMO2Q5JPE7 1267 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 AADACL2Q6P093 401 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 SLC9A9Q8IVB4 645 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 ZZZ3Q8IYH5 903 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 SLC4A9Q96Q91 983 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 LGMNQ99538 433 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 NXF3Q9H4D5 531 aaKnown RBP10.59□□□□□ -0.71
CLIP1-209ENST00000537178 SP140LQ9H930 580 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 TRPV5Q9NQA5 729 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 DNAJC11Q9NVH1 559 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 KCTD5Q9NXV2 234 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 ATXN10Q9UBB4 475 aa10.59□□□□□ -0.71
CLIP1-209ENST00000537178 RIIAD1A6NNX1 92 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 FADS2P1A8MWK0 482 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 H3BNX3 289 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 DBIP07108 87 aaKnown RBP10.58□□□□□ -0.72
CLIP1-209ENST00000537178 BPGMP07738 259 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 RNASEH2BQ5TBB1 312 aaKnown RBP10.58□□□□□ -0.72
CLIP1-209ENST00000537178 GLYATQ6IB77 296 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 ZNF554Q86TJ5 538 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 GPALPP1Q8IXQ4 340 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 KIAA0319LQ8IZA0 1049 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 CCDC54Q8NEL0 328 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 SLC38A4Q969I6 547 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 RFT1Q96AA3 541 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 EFHD2Q96C19 240 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-209ENST00000537178 ACAT2Q9BWD1 397 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 MED28Q9H204 178 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 PHPT1Q9NRX4 125 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-209ENST00000537178 MARK1Q9P0L2 795 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 BAIAP2Q9UQB8 552 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 ZNF510Q9Y2H8 683 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 SQORQ9Y6N5 450 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 BAZ2AQ9UIF9 1905 aaKnown RBP10.58□□□□□ -0.72
CLIP1-209ENST00000537178 KMOO15229 486 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 FADS2O95864 444 aaKnown RBP10.58□□□□□ -0.72
CLIP1-209ENST00000537178 UBA1P22314 1058 aaKnown RBP10.58□□□□□ -0.72
CLIP1-209ENST00000537178 IGFBP5P24593 272 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 PDX1P52945 283 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 POM121L1PQ3SYA9 428 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 PARP8Q8N3A8 854 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 PDPRQ8NCN5 879 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 XAGE5Q8WWM1 108 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 APOLD1Q96LR9 279 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 FCRL4Q96PJ5 515 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 RNF208Q9H0X6 261 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 LRTM1Q9HBL6 345 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 U3KQV3 271 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 CDK5RAP2Q96SN8 1893 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 C22orf31O95567 290 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 CTPS1P17812 591 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 ATF6P18850 670 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 PPM1AP35813 382 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 RGS8P57771 180 aaPredicted RBP10.58□□□□□ -0.72
CLIP1-209ENST00000537178 MAXP61244 160 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 NOMO3P69849 1222 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 MTX3Q5HYI7 312 aa10.58□□□□□ -0.72
CLIP1-209ENST00000537178 ZNF662Q6ZS27 426 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms