RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 AGAP14A8MT82 685 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 PRR5-ARHGAP8B1AHC4 643 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 KERAO60938 352 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 SMIM24O75264 130 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 CHRM1P11229 460 aaPredicted RBP20.55■□□□□ 0.88
VPS28-209ENST00000528142 ESRRAP11474 423 aaPredicted RBP20.55■□□□□ 0.88
VPS28-209ENST00000528142 HNRNPLP14866 589 aaKnown RBP eCLIP20.55■□□□□ 0.88
VPS28-209ENST00000528142 AOC1P19801 751 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 RECQLP46063 649 aaPredicted RBP20.55■□□□□ 0.88
VPS28-209ENST00000528142 CLCN7P51798 805 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 ARHGAP8P85298 464 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 METTL21CQ5VZV1 264 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 PACS2Q86VP3 889 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 ETFBKMTQ8IXQ9 262 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 STAG3L4Q8TBR4 150 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 KLHL32Q96NJ5 620 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 TBC1D10AQ9BXI6 508 aa20.55■□□□□ 0.88
VPS28-209ENST00000528142 TRMT6Q9UJA5 497 aaKnown RBP20.55■□□□□ 0.88
VPS28-209ENST00000528142 MYO9BQ13459 2157 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 IQCF5A8MTL0 148 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 ARSAP15289 507 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 ZNF7P17097 686 aaPredicted RBP20.54■□□□□ 0.88
VPS28-209ENST00000528142 UGT1A6P19224 532 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 CHRM3P20309 590 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 UGT1A1P22309 533 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 UGT1A4P22310 534 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 ACRV1P26436 265 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 UGT1A3P35503 534 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 UGT1A5P35504 534 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 PPARGP37231 505 aaPredicted RBP20.54■□□□□ 0.88
VPS28-209ENST00000528142 GPR33Q49SQ1 333 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 UNC50Q53HI1 259 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 RARS2Q5T160 578 aaKnown RBP20.54■□□□□ 0.88
VPS28-209ENST00000528142 LYPLAL1Q5VWZ2 237 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 WFIKKN2Q8TEU8 576 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 OR52B2Q96RD2 323 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 CDCA3Q99618 268 aaPredicted RBP20.54■□□□□ 0.88
VPS28-209ENST00000528142 MIPEPQ99797 713 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 KLC4Q9NSK0 619 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 DZANK1Q9NVP4 752 aa20.54■□□□□ 0.88
VPS28-209ENST00000528142 UBXN8O00124 270 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 TULP3O75386 442 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 ASLP04424 464 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 SRPRAP08240 638 aaKnown RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 NNMTP40261 264 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 HERVK_113P63132 956 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 GAB4Q2WGN9 574 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 BRAT1Q6PJG6 821 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 RPS27LQ71UM5 84 aaKnown RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 RBFAQ8N0V3 343 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 TIFAQ96CG3 184 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 RAB3IPQ96QF0 476 aaPredicted RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 TTC1Q99614 292 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 BTBD10Q9BSF8 475 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 TRMOQ9BU70 441 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 BOCQ9BWV1 1114 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 ERVK-6Q9BXR3 956 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 CIPCQ9C0C6 399 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 EML4Q9HC35 981 aaKnown RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 B4GALT6Q9UBX8 382 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 TAGLN3Q9UI15 199 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 DHRS7Q9Y394 339 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 NUP210Q8TEM1 1887 aaPredicted RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 TSPAN11A1L157 253 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 CDC7O00311 574 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 ENO1P06733 434 aaKnown RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 IL2P60568 153 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 POLR2LP62875 67 aaKnown RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 TSNQ15631 228 aaKnown RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 SH2D4BQ5SQS7 431 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 UGT3A1Q6NUS8 523 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 CHRDL2Q6WN34 429 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 RINLQ6ZS11 566 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 PTGR2Q8N8N7 351 aaPredicted RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 EEF1AKMT1Q8WVE0 214 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 FUBP1Q96AE4 644 aaKnown RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 ZFYVE19Q96K21 471 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 NUF2Q9BZD4 464 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 CLPBQ9H078 707 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 WDR55Q9H6Y2 383 aaPredicted RBP20.53■□□□□ 0.88
VPS28-209ENST00000528142 TRPV4Q9HBA0 871 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 TNFRSF12AQ9NP84 129 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 TCF7L2Q9NQB0 619 aa20.53■□□□□ 0.88
VPS28-209ENST00000528142 CCDC189A1A4V9 331 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 OTOL1A6NHN0 477 aaPredicted RBP20.52■□□□□ 0.88
VPS28-209ENST00000528142 TMEM233B4DJY2 109 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 E5RI56 91 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 UBFD1O14562 309 aaKnown RBP20.52■□□□□ 0.88
VPS28-209ENST00000528142 LEFTY1O75610 366 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 JUNP05412 331 aaKnown RBP20.52■□□□□ 0.88
VPS28-209ENST00000528142 C1SP09871 688 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 TTC31Q49AM3 519 aaPredicted RBP20.52■□□□□ 0.88
VPS28-209ENST00000528142 RFLNAQ6ZTI6 216 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 GPR149Q86SP6 731 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 CUZD1Q86UP6 607 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 CPNE9Q8IYJ1 553 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 NXPE1Q8N323 547 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 EXT2Q93063 718 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 FAM83CQ9BQN1 747 aa20.52■□□□□ 0.88
VPS28-209ENST00000528142 OSBPL1AQ9BXW6 950 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms