RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 NT5C1AQ9BXI3 368 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 ZBTB20Q9HC78 741 aaPredicted RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 EIF2B3Q9NR50 452 aaKnown RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 CPSF3Q9UKF6 684 aaKnown RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 UBFD1O14562 309 aaKnown RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 C7P10643 843 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 PTPN3P26045 913 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 ST13P50502 369 aaKnown RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 LDB1Q86U70 411 aaPredicted RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 SULF1Q8IWU6 871 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 OR8H2Q8N162 312 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 LGALS12Q96DT0 336 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 CELF6Q96J87 481 aaKnown RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 CLSTN3Q9BQT9 956 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 DCSTAMPQ9H295 470 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 FBXO9Q9UK97 447 aaPredicted RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 SNX6Q9UNH7 406 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 TTC24A2A3L6 582 aaPredicted RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 KRT87PA6NCN2 255 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 CCDC154A6NI56 674 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 TARM1B6A8C7 271 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 CST1P01037 141 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 DNTTP04053 509 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 ALPLP05186 524 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 POLD2P49005 469 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 FOXA1P55317 472 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 PAGE3Q5JUK9 113 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 SDE2Q6IQ49 451 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 METTL4Q8N3J2 472 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 SVOPQ8N4V2 548 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 SPATA22Q8NHS9 363 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 STON2Q8WXE9 905 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 TBRG4Q969Z0 631 aaKnown RBP eCLIP13□□□□□ -0.33
GAPVD1-220ENST00000497580 GJD4Q96KN9 370 aaPredicted RBP13□□□□□ -0.33
GAPVD1-220ENST00000497580 YME1L1Q96TA2 773 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 AMBRA1Q9C0C7 1298 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 RIBC2Q9H4K1 309 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 CSADQ9Y600 493 aa13□□□□□ -0.33
GAPVD1-220ENST00000497580 LACTBL1A8MY62 500 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 EFCAB9A8MZ26 197 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 HACD1B0YJ81 288 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 EEF2KO00418 725 aaKnown RBP12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 GSTA4O15217 222 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 ALX3O95076 343 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 GABARAPO95166 117 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 SUPT20HL2P0C7V6 817 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 S100A5P33763 92 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 MADCAM1Q13477 382 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 NPTX1Q15818 432 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 GPR162Q16538 588 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 SUPT20HL1Q3ZLR7 823 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 CYP20A1Q6UW02 462 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 OTOP3Q7RTS5 596 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 OR6B3Q8NGW1 331 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 ZNF717Q9BY31 904 aaPredicted RBP12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 SP140LQ9H930 580 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 PIGRP01833 764 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 PFKMP08237 780 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 CD36P16671 472 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 SLC1A2P43004 574 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 KPNA2P52292 529 aaKnown RBP12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 BST2Q10589 180 aaKnown RBP12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 SURF1Q15526 300 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 BTBD8Q5XKL5 378 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 LARP4Q71RC2 724 aaKnown RBP eCLIP12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 DCBLD1Q8N8Z6 715 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 SLC7A14Q8TBB6 771 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 TMEM125Q96AQ2 219 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 GPR78Q96P69 363 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 TBCDQ9BTW9 1192 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 RASSF1Q9NS23 344 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 LIMD1Q9UGP4 676 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 UTS2RQ9UKP6 389 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 PCM1Q15154 2024 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 TRIP11Q15643 1979 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 RECQL5O94762 991 aaPredicted RBP12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 ARL2P36404 184 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 CLCNKBP51801 687 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 P2RX3P56373 397 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 ATF7IP2Q5U623 682 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 FAM86B1Q8N7N1 296 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 SPERTQ8NA61 448 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 TP53I13Q8NBR0 393 aaPredicted RBP12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 LEMD2Q8NC56 503 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 ZNF540Q8NDQ6 660 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 PIK3C3Q8NEB9 887 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 OR52K2Q8NGK3 314 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 NCLNQ969V3 563 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 MED30Q96HR3 178 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 MLPHQ9BV36 600 aaPredicted RBP12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 SETD4Q9NVD3 440 aa12.99□□□□□ -0.33
GAPVD1-220ENST00000497580 BBIP1A8MTZ0 92 aa12.98□□□□□ -0.33
GAPVD1-220ENST00000497580 CCL22O00626 93 aa12.98□□□□□ -0.33
GAPVD1-220ENST00000497580 MSCO60682 206 aa12.98□□□□□ -0.33
GAPVD1-220ENST00000497580 CPB1P15086 417 aa12.98□□□□□ -0.33
GAPVD1-220ENST00000497580 CXCR3P49682 368 aa12.98□□□□□ -0.33
GAPVD1-220ENST00000497580 YWHAHQ04917 246 aaPredicted RBP12.98□□□□□ -0.33
GAPVD1-220ENST00000497580 FAM98BQ52LJ0 330 aaKnown RBP12.98□□□□□ -0.33
GAPVD1-220ENST00000497580 ZNF789Q5FWF6 425 aa12.98□□□□□ -0.33
GAPVD1-220ENST00000497580 ABHD15Q6UXT9 468 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms