RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 ARNTP27540 789 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 GPX6P59796 221 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 CACNG1Q06432 222 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 NFATC2Q13469 925 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 ITGA9Q13797 1035 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 SPDYCQ5MJ68 293 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 ZNF648Q5T619 568 aaPredicted RBP17.06■□□□□ 0.32
LIME1-208ENST00000493265 ARMC3Q5W041 872 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 STEAP4Q687X5 459 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 PSAPL1Q6NUJ1 521 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 TRMT10BQ6PF06 316 aaKnown RBP17.06■□□□□ 0.32
LIME1-208ENST00000493265 DOK6Q6PKX4 331 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 C3orf62Q6ZUJ4 267 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 LDB1Q86U70 411 aaPredicted RBP17.06■□□□□ 0.32
LIME1-208ENST00000493265 KCNMB4Q86W47 210 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 GSDMBQ8TAX9 411 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 PEX13Q92968 403 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 BMFQ96LC9 184 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 SMOC1Q9H4F8 434 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 WDR26Q9H7D7 661 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 LRRC4CQ9HCJ2 640 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 TM9SF3Q9HD45 589 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 IARS2Q9NSE4 1012 aaKnown RBP17.06■□□□□ 0.32
LIME1-208ENST00000493265 CATSPERZQ9NTU4 200 aa17.06■□□□□ 0.32
LIME1-208ENST00000493265 MARCH4Q9P2E8 410 aaPredicted RBP17.06■□□□□ 0.32
LIME1-208ENST00000493265 NFKBIL1Q9UBC1 381 aaPredicted RBP17.06■□□□□ 0.32
LIME1-208ENST00000493265 A6NNZ2 444 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 H7C0S8 307 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 CD3EAPO15446 510 aaKnown RBP17.05■□□□□ 0.32
LIME1-208ENST00000493265 MTX2O75431 263 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 SLC25A14O95258 325 aaPredicted RBP17.05■□□□□ 0.32
LIME1-208ENST00000493265 PSMA3P25788 255 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 FOXN2P32314 431 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 ARCN1P48444 511 aaKnown RBP17.05■□□□□ 0.32
LIME1-208ENST00000493265 PMS2P54278 862 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 CBLBQ13191 982 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 HSP90AA5PQ58FG0 334 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 NEPROQ6NW34 567 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 ADAMTSL4Q6UY14 1074 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 Q6ZSR6 202 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 SNX20Q7Z614 316 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 PIANPQ8IYJ0 282 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 TMEM145Q8NBT3 493 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 OR13H1Q8NG92 308 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 DNASE2BQ8WZ79 361 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.05■□□□□ 0.32
LIME1-208ENST00000493265 CERS2Q96G23 380 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 HIC2Q96JB3 615 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 APOOQ9BUR5 198 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 LGR4Q9BXB1 951 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 TMEM74BQ9NUR3 256 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 SLC17A6Q9P2U8 582 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 RAB21Q9UL25 225 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 TMPRSS11EQ9UL52 423 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 HS3ST3A1Q9Y663 406 aa17.05■□□□□ 0.32
LIME1-208ENST00000493265 ZNF106Q9H2Y7 1883 aaKnown RBP17.05■□□□□ 0.32
LIME1-208ENST00000493265 ZFHX4Q86UP3 3567 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 BCAT2O15382 392 aaPredicted RBP17.04■□□□□ 0.32
LIME1-208ENST00000493265 PIAS1O75925 651 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 ASMTLO95671 621 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 PYGLP06737 847 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 TUBBP07437 444 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 ZNF806P0C7X5 589 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 THEGLP0DJG4 465 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 CD38P28907 300 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 PMLP29590 882 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 AKT1P31749 480 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 CSNK1EP49674 416 aaKnown RBP17.04■□□□□ 0.32
LIME1-208ENST00000493265 RACK1P63244 317 aaKnown RBP17.04■□□□□ 0.32
LIME1-208ENST00000493265 CDK3Q00526 305 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 SEMA3AQ14563 771 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 PDPK2PQ6A1A2 396 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 ZNF470Q6ECI4 717 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 NLRP8Q86W28 1048 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 SERPINA9Q86WD7 417 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 BTN2A2Q8WVV5 523 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 UBLCP1Q8WVY7 318 aaPredicted RBP17.04■□□□□ 0.32
LIME1-208ENST00000493265 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.04■□□□□ 0.32
LIME1-208ENST00000493265 GLYATL1Q969I3 302 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 FUBP1Q96AE4 644 aaKnown RBP17.04■□□□□ 0.32
LIME1-208ENST00000493265 KLHDC7BQ96G42 594 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 LOXL4Q96JB6 756 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 TTC25Q96NG3 672 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 C19orf43Q9BQ61 176 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 PHPT1Q9NRX4 125 aaPredicted RBP17.04■□□□□ 0.32
LIME1-208ENST00000493265 MOSPD1Q9UJG1 213 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 CNOT6Q9ULM6 557 aaKnown RBP17.04■□□□□ 0.32
LIME1-208ENST00000493265 TMEM98Q9Y2Y6 226 aa17.04■□□□□ 0.32
LIME1-208ENST00000493265 TCRBV9S1A1TA0A576 114 aa17.03■□□□□ 0.32
LIME1-208ENST00000493265 CACNB4O00305 520 aaPredicted RBP17.03■□□□□ 0.32
LIME1-208ENST00000493265 CTIFO43310 598 aaKnown RBP17.03■□□□□ 0.32
LIME1-208ENST00000493265 WNT1P04628 370 aa17.03■□□□□ 0.32
LIME1-208ENST00000493265 GNSP15586 552 aa17.03■□□□□ 0.32
LIME1-208ENST00000493265 PHBP35232 272 aa17.03■□□□□ 0.32
LIME1-208ENST00000493265 POLD2P49005 469 aa17.03■□□□□ 0.32
LIME1-208ENST00000493265 THOP1P52888 689 aa17.03■□□□□ 0.32
LIME1-208ENST00000493265 LIMK1P53667 647 aa17.03■□□□□ 0.32
LIME1-208ENST00000493265 MGAT5Q09328 741 aa17.03■□□□□ 0.32
LIME1-208ENST00000493265 PDE1CQ14123 709 aaPredicted RBP17.03■□□□□ 0.32
LIME1-208ENST00000493265 GPR33Q49SQ1 333 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms