RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CCR2P41597 374 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 FOXA1P55317 472 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 IL2P60568 153 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 CLCQ05315 142 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 DGKKQ5KSL6 1271 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 METTL3Q86U44 580 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 CPNE9Q8IYJ1 553 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 PYDC1Q8WXC3 89 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 N4BP2L2Q92802 583 aaPredicted RBP20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 NPAS2Q99743 824 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 ZFYVE1Q9HBF4 777 aa20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 MKI67P46013 3256 aaKnown RBP20.94■□□□□ 0.94
CCDC88B-208ENST00000492980 ATP6AP2A0A1C7CYW4 349 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 IQCF5A8MTL0 148 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 E5RI56 91 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 STX16-NPEPL1H3BU86 382 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 STX16O14662 325 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ATP6AP2O75787 350 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ENO3P13929 434 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ACADSP16219 412 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PFKLP17858 780 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CLCN7P51798 805 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 LCP2Q13094 533 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ART3Q13508 389 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 FASTKQ14296 549 aaKnown RBP20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CDKN3Q16667 212 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 FAM151BQ6UXP7 276 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CERS6Q6ZMG9 384 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CMTM8Q8IZV2 173 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 GRIN3AQ8TCU5 1115 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 SLC26A7Q8TE54 656 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CDRT15Q96T59 188 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 SERPINI1Q99574 410 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 C1QTNF3Q9BXJ4 246 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ATP13A3Q9H7F0 1226 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 WDR41Q9HAD4 459 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 HCFC1R1Q9NWW0 138 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PACSIN3Q9UKS6 424 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 C1orf232A0A0U1RR37 186 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PSMD12O00232 456 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PRAMEF1O95521 474 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 BAG2O95816 211 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CA5AP35218 305 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 HNF1BP35680 557 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 DPP6P42658 865 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CTSOP43234 321 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ERVFC1P60507 584 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 FBXO48Q5FWF7 155 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PIGGQ5H8A4 983 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PITRM1Q5JRX3 1037 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ANKS6Q68DC2 871 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ADGRG6Q86SQ4 1221 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PPFIBP2Q8ND30 876 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 TWIST2Q8WVJ9 160 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 ARMC5Q96C12 935 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CCDC97Q96F63 343 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 KCNA7Q96RP8 456 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 TCF25Q9BQ70 676 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 CCL26Q9Y258 94 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PCDHB1Q9Y5F3 818 aa20.93■□□□□ 0.94
CCDC88B-208ENST00000492980 PRMT5O14744 637 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 ATP4BP51164 291 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 HK3P52790 923 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 THOP1P52888 689 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 MAPRE2Q15555 327 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 ZSWIM9Q86XI8 627 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 OR2AP1Q8NGE2 309 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 VOPP1Q96AW1 172 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 RPL10LQ96L21 214 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 C19orf43Q9BQ61 176 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 FBRSL1Q9HCM7 1045 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 SARS2Q9NP81 518 aaKnown RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 PTGDR2Q9Y5Y4 395 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 DOCK6Q96HP0 2047 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 A0A1B0GTL3 188 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 CAPN8A6NHC0 703 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 NCF1BA6NI72 391 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 NCF1CA8MVU1 366 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 PIP5K1BO14986 540 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 CSPG5O95196 566 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 CLDN7O95471 211 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 GLUD1P00367 558 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 CYBBP04839 570 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 SRCP12931 536 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 NCF1P14598 390 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 STK19P49842 368 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 GEN1Q17RS7 908 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 ZNF423Q2M1K9 1284 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 AGKQ53H12 422 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 UGT3A1Q6NUS8 523 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 TXNDC11Q6PKC3 985 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 SERPINA9Q86WD7 417 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 HIPK4Q8NE63 616 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 RIN3Q8TB24 985 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 EMILIN2Q9BXX0 1053 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 AKTIPQ9H8T0 292 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 SEMA4BQ9NPR2 832 aaPredicted RBP20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 WBP1LQ9NX94 342 aa20.92■□□□□ 0.94
CCDC88B-208ENST00000492980 HIDE1A8MVS5 230 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms