RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 GBE1Q04446 702 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 PPATQ06203 517 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 NIPAL4Q0D2K0 466 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 LRRC74AQ0VAA2 488 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 NPRL3Q12980 569 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CSTF3Q12996 717 aaKnown RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 IKQ13123 557 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 BAATQ14032 418 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 IL13RA2Q14627 380 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 MFSD13AQ14CX5 517 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 SLC18A3Q16572 532 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 COL28A1Q2UY09 1125 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TBRG1Q3YBR2 411 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 RUNDC3AQ59EK9 446 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CXorf66Q5JRM2 361 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CC2D1BQ5T0F9 858 aaKnown RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TBC1D3GQ6DHY5 549 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TBC1D3CQ6IPX1 549 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TMEM154Q6P9G4 183 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TSSK4Q6SA08 328 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 NHLRC1Q6VVB1 395 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CCDC105Q8IYK2 499 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TBC1D3Q8IZP1 549 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 VPS52Q8N1B4 723 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 C12orf76Q8N812 135 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TC2NQ8N9U0 490 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 DBF4BQ8NFT6 615 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TNIP2Q8NFZ5 429 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CTCFLQ8NI51 663 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 SETD6Q8TBK2 473 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 RNASE8Q8TDE3 154 aaKnown RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 ST7LQ8TDW4 575 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TEKT4Q8WW24 435 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 SHC3Q92529 594 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 PTERQ96BW5 349 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 MRPL38Q96DV4 380 aaKnown RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 EDC3Q96F86 508 aaKnown RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 KAZALD1Q96I82 304 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 VPS39Q96JC1 886 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 OR2A14Q96R47 310 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TRIM6Q9C030 488 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 NUAK2Q9H093 628 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 FOXP1Q9H334 677 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 PLK3Q9H4B4 646 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 MBNL1Q9NR56 388 aaKnown RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 SIRT3Q9NTG7 399 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 ANO10Q9NW15 660 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 MDFICQ9P1T7 246 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 NKX1-2Q9UD57 310 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CDH22Q9UJ99 828 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CLDN16Q9Y5I7 305 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 IKBKGQ9Y6K9 419 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 SESN1Q9Y6P5 492 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 KIF15Q9NS87 1388 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 ADGRL2O95490 1459 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 A0A0A6YYC8 382 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 A0A1W2PPM1 405 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 C16orf96A6NNT2 1141 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TMEM110-MUSTN1A8MSY1 372 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 FAM86B1E9PN63 330 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 I3L1I5 382 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CLIC2O15247 247 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 PRPF4O43172 522 aaKnown RBP eCLIP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 PRDM1O75626 825 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 WDR47O94967 919 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 BCL10O95999 233 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 PNPP00491 289 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 FAM86B2P0C5J1 330 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 FAM58BPP0C7Q3 252 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 GHRP10912 638 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 MMP9P14780 707 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 IL7RP16871 459 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CDH2P19022 906 aaPredicted RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CYP11B2P19099 503 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 TYMPP19971 482 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 SLC16A2P36021 539 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CDKN1AP38936 164 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 GSTM5P46439 218 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 LMAN1P49257 510 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CAMPP49913 170 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CCR3P51677 355 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 HSPA2P54652 639 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 GALCP54803 685 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 YPEL5P62699 121 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CYP4A11Q02928 519 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 IFT88Q13099 833 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 MORF4L2Q15014 288 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 SLC39A14Q15043 492 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 RRS1Q15050 365 aaKnown RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 ANKRD20A4Q4UJ75 823 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 GLE1Q53GS7 698 aaKnown RBP3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 ANKRD20A8PQ5CZ79 823 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 ANKRD20A2Q5SQ80 823 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 STXBP5Q5T5C0 1151 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 ANKRD20A1Q5TYW2 823 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 ANKRD20A3Q5VUR7 823 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 CST9LP1Q5W188 147 aa3.22□□□□□ -1.89
DEPDC1-204ENST00000489862 OLFM4Q6UX06 510 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms