RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 GAS8O95995 478 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 EPOP01588 193 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 FECHP22830 423 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 AKT1P31749 480 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 PTPN7P35236 360 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 SPAM1P38567 509 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 MLLT3P42568 568 aaPredicted RBP9.04□□□□□ -0.96
HDAC6-232ENST00000489053 MAPK9P45984 424 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 GPR3P46089 330 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 LMAN1P49257 510 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 UCNP55089 124 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 PDE1BQ01064 536 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 ITGA9Q13797 1035 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 HLTFQ14527 1009 aaKnown RBP eCLIP9.04□□□□□ -0.96
HDAC6-232ENST00000489053 COL28A1Q2UY09 1125 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 PLA2G4EQ3MJ16 856 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 SIRPB2Q5JXA9 342 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 HENMT1Q5T8I9 393 aaKnown RBP9.04□□□□□ -0.96
HDAC6-232ENST00000489053 TMEM164Q5U3C3 297 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 OGFOD3Q6PK18 319 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 CRTC3Q6UUV7 619 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 RAB11FIP2Q7L804 512 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 SLC9B2Q86UD5 537 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 TRAPPC5Q8IUR0 188 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 SNIP1Q8TAD8 396 aaKnown RBP9.04□□□□□ -0.96
HDAC6-232ENST00000489053 GLYATL1Q969I3 302 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 TMEM159Q96B96 161 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 LIN37Q96GY3 246 aaPredicted RBP9.04□□□□□ -0.96
HDAC6-232ENST00000489053 COX14Q96I36 57 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 PLEKHG4BQ96PX9 1271 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 DPYSL5Q9BPU6 564 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 HERPUD2Q9BSE4 406 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 FICDQ9BVA6 458 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 LACRTQ9GZZ8 138 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 TRIM39Q9HCM9 518 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 BPIFA1Q9NP55 256 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 ARFGAP3Q9NP61 516 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 KLC4Q9NSK0 619 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 PISDQ9UG56 409 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 ATXN7L1Q9ULK2 861 aaPredicted RBP9.04□□□□□ -0.96
HDAC6-232ENST00000489053 GUCA1BQ9UMX6 200 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 KCNK6Q9Y257 313 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 PCDHGA8Q9Y5G5 932 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 ENTPD2Q9Y5L3 495 aa9.04□□□□□ -0.96
HDAC6-232ENST00000489053 TDRD6O60522 2096 aaKnown RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 SHROOM3Q8TF72 1996 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 ARID1BQ8NFD5 2236 aaPredicted RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 TRBV23OR9-2A0A075B6M9 112 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 A0A087WV48 116 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 GLYATL1P3A0A0U1RQE8 302 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 OR5K4A6NMS3 321 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 FADS2P1A8MWK0 482 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 E7EVH7 732 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 KMOO15229 486 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 KLK10O43240 276 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 VEGFDO43915 354 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 CDK14O94921 469 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 CRTAMO95727 393 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 SOD1P00441 154 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 ITGA2BP08514 1039 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 PYGMP11217 842 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 RALBP11234 206 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 MSH3P20585 1137 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 CSTF2P33240 577 aaKnown RBP eCLIP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 CD68P34810 354 aaPredicted RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 HMGCLP35914 325 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 EIF2S3P41091 472 aaKnown RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 HALP42357 657 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 MAPK10P53779 464 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 OR1D5P58170 312 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 ADCY2Q08462 1091 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 NFATC2Q13469 925 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 IHHQ14623 411 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 SLC1A5Q15758 541 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 CLPPQ16740 277 aaPredicted RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 P3H1Q32P28 736 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 LDLRAP1Q5SW96 308 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 FAM182AQ5T1J6 154 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 FAM151BQ6UXP7 276 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 USP53Q70EK8 1073 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 TMC3Q7Z5M5 1100 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 PDZD3Q86UT5 571 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 LRRTM4Q86VH4 590 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 NRROSQ86YC3 692 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 RNF10Q8N5U6 811 aaKnown RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 LRRC57Q8N9N7 239 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 GPR26Q8NDV2 337 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 BRSK1Q8TDC3 778 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 PTCD2Q8WV60 388 aaKnown RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 UBE2Q2Q8WVN8 375 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 DCUN1D1Q96GG9 259 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 SPATA13Q96N96 652 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 FAM118BQ9BPY3 351 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 RABGEF1Q9UJ41 708 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 PACSIN2Q9UNF0 486 aaPredicted RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 DNAJC16Q9Y2G8 782 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 REXO2Q9Y3B8 237 aaKnown RBP9.03□□□□□ -0.96
HDAC6-232ENST00000489053 PLEKHM1Q9Y4G2 1056 aa9.03□□□□□ -0.96
HDAC6-232ENST00000489053 LOXL2Q9Y4K0 774 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms