RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 UQCRHLA0A096LP55 91 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 A6NNZ2 444 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 AGAP14A8MT82 685 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 CACNB4O00305 520 aaPredicted RBP12.13□□□□□ -0.47
SDC1-206ENST00000482879 TOR1BO14657 336 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 UQCRHP07919 91 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 OGNP20774 298 aaKnown RBP12.13□□□□□ -0.47
SDC1-206ENST00000482879 ACRV1P26436 265 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 CD38P28907 300 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 RABIFP47224 123 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 PFN3P60673 137 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 YPEL5P62699 121 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 RACK1P63244 317 aaKnown RBP12.13□□□□□ -0.47
SDC1-206ENST00000482879 CDK3Q00526 305 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 TCF15Q12870 199 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 CTBP1Q13363 440 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 SLC29A2Q14542 456 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 LPAL2Q16609 132 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 DBN1Q16643 649 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 LDLRAP1Q5SW96 308 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 ZNF648Q5T619 568 aaPredicted RBP12.13□□□□□ -0.47
SDC1-206ENST00000482879 GPRC6AQ5T6X5 926 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 TEDDM1Q5T9Z0 273 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 ZNF470Q6ECI4 717 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 ZNF449Q6P9G9 518 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 KYAT3Q6YP21 454 aaKnown RBP12.13□□□□□ -0.47
SDC1-206ENST00000482879 CERS6Q6ZMG9 384 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 Q6ZSR6 202 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 ABI3BPQ7Z7G0 1075 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 TRIM74Q86UV6 250 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 CILP2Q8IUL8 1156 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 PHYKPLQ8IUZ5 450 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 DENND6AQ8IWF6 608 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 LMNTD2Q8IXW0 634 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 NXPE1Q8N323 547 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 PNPLA1Q8N8W4 532 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 PRSS33Q8NF86 280 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 C1orf216Q8TAB5 229 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 FAM174AQ8TBP5 190 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 CDKL2Q92772 493 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 FUBP1Q96AE4 644 aaKnown RBP12.13□□□□□ -0.47
SDC1-206ENST00000482879 KLHDC7BQ96G42 594 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 LGR4Q9BXB1 951 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 TM9SF3Q9HD45 589 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 ARFGAP3Q9NP61 516 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 SMYD2Q9NRG4 433 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 SMOXQ9NWM0 555 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 ZDHHC3Q9NYG2 299 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 ZFATQ9P243 1243 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 RABGEF1Q9UJ41 708 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 FBXO5Q9UKT4 447 aa12.13□□□□□ -0.47
SDC1-206ENST00000482879 FAM159BA6NKW6 160 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 CXorf49A8MYA2 514 aaPredicted RBP12.12□□□□□ -0.47
SDC1-206ENST00000482879 PFDN6O15212 129 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 BCAT2O15382 392 aaPredicted RBP12.12□□□□□ -0.47
SDC1-206ENST00000482879 MTX2O75431 263 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 NDUFS3O75489 264 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 PIAS1O75925 651 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 ASMTLO95671 621 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 S1PR4O95977 384 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 ABHD2P08910 425 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 HOXC4P09017 264 aaPredicted RBP12.12□□□□□ -0.47
SDC1-206ENST00000482879 THEGLP0DJG4 465 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 MYCLP1P12525 358 aaPredicted RBP12.12□□□□□ -0.47
SDC1-206ENST00000482879 GNSP15586 552 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 MSH3P20585 1137 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 HSD17B3P37058 310 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 SLC1A2P43004 574 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 TTPAP49638 278 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 ITIH4Q14624 930 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 UAP1Q16222 522 aaPredicted RBP12.12□□□□□ -0.47
SDC1-206ENST00000482879 KBTBD12Q3ZCT8 623 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 DOK6Q6PKX4 331 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 CNTN4Q8IWV2 1026 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 CTAGE3PQ8IX95 158 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 MREGQ8N565 214 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 PPM1NQ8N819 430 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 MFSD2AQ8NA29 543 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 C2CD4AQ8NCU7 369 aaPredicted RBP12.12□□□□□ -0.47
SDC1-206ENST00000482879 DDHD1Q8NEL9 900 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 OR13H1Q8NG92 308 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 HEXDCQ8WVB3 486 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 PIGKQ92643 395 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 DCUN1D1Q96GG9 259 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 COX14Q96I36 57 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 TCF12Q99081 682 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 CYTH2Q99418 400 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 COPS8Q99627 209 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 FUT8Q9BYC5 575 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 EPB41L4BQ9H329 900 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 TRIM39Q9HCM9 518 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 ARGLU1Q9NWB6 273 aaPredicted RBP12.12□□□□□ -0.47
SDC1-206ENST00000482879 SLC17A6Q9P2U8 582 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 RAB23Q9ULC3 237 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 TMEM98Q9Y2Y6 226 aa12.12□□□□□ -0.47
SDC1-206ENST00000482879 OAS3Q9Y6K5 1087 aaKnown RBP12.12□□□□□ -0.47
SDC1-206ENST00000482879 ATXN2Q99700 1313 aaKnown RBP12.11□□□□□ -0.47
SDC1-206ENST00000482879 CABIN1Q9Y6J0 2220 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 A0A1B0GTW7 788 aa12.11□□□□□ -0.47
SDC1-206ENST00000482879 A0A1W2PR77 199 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms