RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 VIMP08670 466 aaKnown RBP12.73□□□□□ -0.37
VPS13D-205ENST00000473099 RBP1P09455 135 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 RALBP11234 206 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 TAC1P20366 129 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 FMO4P31512 558 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 CREB5Q02930 508 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 ZBTB16Q05516 673 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 ASPHQ12797 758 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 CRY1Q16526 586 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 EOGTQ5NDL2 527 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 ZNF549Q6P9A3 640 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 TECPR1Q7Z6L1 1165 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 NLRP8Q86W28 1048 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 NUDCD3Q8IVD9 361 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 CENPLQ8N0S6 344 aaPredicted RBP12.73□□□□□ -0.37
VPS13D-205ENST00000473099 NKAPQ8N5F7 415 aaKnown RBP12.73□□□□□ -0.37
VPS13D-205ENST00000473099 ACVR1CQ8NER5 493 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 BCAS4Q8TDM0 211 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 ZNF75CPQ92670 426 aaPredicted RBP12.73□□□□□ -0.37
VPS13D-205ENST00000473099 UBXN10Q96LJ8 280 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 BIRC8Q96P09 236 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 VPS35Q96QK1 796 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 COPS8Q99627 209 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 OLFM1Q99784 485 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 MRPL57Q9BQC6 102 aaKnown RBP12.73□□□□□ -0.37
VPS13D-205ENST00000473099 SPATA16Q9BXB7 569 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 C1QTNF1Q9BXJ1 281 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 P2RY12Q9H244 342 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 FAM96AQ9H5X1 160 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 MANSC1Q9H8J5 431 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 TMEM216Q9P0N5 145 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 SIRPGQ9P1W8 387 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 EMCNQ9ULC0 261 aa12.73□□□□□ -0.37
VPS13D-205ENST00000473099 RUVBL2Q9Y230 463 aaKnown RBP12.73□□□□□ -0.37
VPS13D-205ENST00000473099 IGLV3-16A0A075B6K0 115 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 A0A0U1RQS6 177 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 TCP11X1B4DZS4 312 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 LOC730098B7Z3J9 87 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 NEMP1O14524 444 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 NDUFAB1O14561 156 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 F7P08709 466 aaPredicted RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 PRSS56P0CW18 603 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 CCDC166P0CW27 439 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 C7P10643 843 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 HOXB2P14652 356 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 ZNF37AP17032 561 aaPredicted RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 P2RY2P41231 377 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 LIG3P49916 1009 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 CDKN1CP49918 316 aaPredicted RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 CDKN2DP55273 166 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 SEC13P55735 322 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 IRF9Q00978 393 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 PPARDQ03181 441 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 ACAP2Q15057 778 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 ACOX1Q15067 660 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 POM121L1PQ3SYA9 428 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 LRRC73Q5JTD7 316 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 HENMT1Q5T8I9 393 aaKnown RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 PTRHD1Q6GMV3 140 aaKnown RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 LRRC8EQ6NSJ5 796 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 MACC1Q6ZN28 852 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 HSD11B1LQ7Z5J1 315 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 PLD6Q8N2A8 252 aaKnown RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 IL17RCQ8NAC3 791 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 CXorf40AQ8TE69 158 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 KCTD4Q8WVF5 259 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 EZH1Q92800 747 aaPredicted RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 CCDC126Q96EE4 140 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 DTD2Q96FN9 168 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 SCYL1Q96KG9 808 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 COQ10AQ96MF6 247 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 ASB2Q96Q27 587 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 PANX3Q96QZ0 392 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 CCT8L2Q96SF2 557 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 TSSK1BQ9BXA7 367 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 MRPL46Q9H2W6 279 aaKnown RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 KLHL42Q9P2K6 505 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 COPG2Q9UBF2 871 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 TRMT6Q9UJA5 497 aaKnown RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 OAS3Q9Y6K5 1087 aaKnown RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 TTC28Q96AY4 2481 aa12.72□□□□□ -0.37
VPS13D-205ENST00000473099 ZFC3H1O60293 1989 aaKnown RBP12.72□□□□□ -0.37
VPS13D-205ENST00000473099 MID1O15344 667 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 KLF8O95600 359 aaPredicted RBP12.71□□□□□ -0.37
VPS13D-205ENST00000473099 DNTTP04053 509 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 ASGR2P07307 311 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 OR56A5P0C7T3 313 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 MYL2P10916 166 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 BMP1P13497 986 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 CPA3P15088 417 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 GRK2P25098 689 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 WASP42768 502 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 SEC24CP53992 1094 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 ATP6V0D1P61421 351 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 SEMG2Q02383 582 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 DPTQ07507 201 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 CNTN1Q12860 1018 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 CSHL1Q14406 222 aa12.71□□□□□ -0.37
VPS13D-205ENST00000473099 TTC31Q49AM3 519 aaPredicted RBP12.71□□□□□ -0.37
VPS13D-205ENST00000473099 ATP13A5Q4VNC0 1218 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms