RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-209ENST00000472044 SMARCAL1Q9NZC9 954 aa3.8□□□□□ -1.8
PTCD3-209ENST00000472044 DNAJB4Q9UDY4 337 aa3.8□□□□□ -1.8
PTCD3-209ENST00000472044 STK39Q9UEW8 545 aa3.8□□□□□ -1.8
PTCD3-209ENST00000472044 NRBP1Q9UHY1 535 aa3.8□□□□□ -1.8
PTCD3-209ENST00000472044 NFS1Q9Y697 457 aa3.8□□□□□ -1.8
PTCD3-209ENST00000472044 IGLV5-37A0A075B6J1 123 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 LOC100509620A0A075B734 347 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 SYNDIG1LA6NDD5 238 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 TMEM8BA6NDV4 472 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 LRRC72A6NJI9 287 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 GLOD5A6NK44 160 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 PLOD3O60568 738 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 NTN1O95631 604 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 ALPLP05186 524 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 FCGR1AP12314 374 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 TRIM21P19474 475 aaKnown RBP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 ITGB8P26012 769 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 MSH2P43246 934 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 PEX5P50542 639 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 FOXG1P55316 489 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 PSMC6P62333 389 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 TUBA1BP68363 451 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 LTBQ06643 244 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 CXCL9Q07325 125 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 GRSF1Q12849 480 aaKnown RBP eCLIP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 ZNF155Q12901 538 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 BAATQ14032 418 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 CALCRLQ16602 461 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 SYT16Q17RD7 645 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 MYLK3Q32MK0 819 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 GARNL3Q5VVW2 1013 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 C18orf63Q68DL7 685 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 WDR73Q6P4I2 378 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 TPRG1Q6ZUI0 275 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 KBTBD6Q86V97 674 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 SCYL3Q8IZE3 742 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 OR2AK2Q8NG84 335 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 ZBTB9Q96C00 473 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 ERP27Q96DN0 273 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 MTBPQ96DY7 904 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 CEP295NLQ96MC4 621 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 KIFC3Q9BVG8 833 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 ARHGEF38Q9NXL2 777 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 MRPL15Q9P015 296 aaKnown RBP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 MARCH4Q9P2E8 410 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 CHORDC1Q9UHD1 332 aaPredicted RBP3.79□□□□□ -1.8
PTCD3-209ENST00000472044 PADI1Q9ULC6 663 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 LOXL2Q9Y4K0 774 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 SNX9Q9Y5X1 595 aa3.79□□□□□ -1.8
PTCD3-209ENST00000472044 LNP1A1A4G5 178 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 EIF4E1BA6NMX2 242 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 SRRM3A6NNA2 597 aaPredicted RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 H3BQ06 376 aaPredicted RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 SH2B2O14492 632 aaPredicted RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 ANKRD28O15084 1053 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 ADAMDEC1O15204 470 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 MID1O15344 667 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 INSIG1O15503 277 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 SMAD6O43541 496 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 CLDN14O95500 239 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 GH2P01242 217 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 CENPBP07199 599 aaPredicted RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 MMP9P14780 707 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 PRLRP16471 622 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 S1PR1P21453 382 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 THBS3P49746 956 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 SUOXP51687 545 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 RRP1P56182 461 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 BRWD1-AS2P59051 145 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 TAS2R38P59533 333 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 CDC16Q13042 620 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 MYBPHQ13203 477 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 MVPQ14764 893 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 KCNT1Q5JUK3 1230 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 MFSD4BQ5TF39 518 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 RHBDF2Q6PJF5 856 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 CCNI2Q6ZMN8 369 aaPredicted RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 ATG9AQ7Z3C6 839 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 LINC00346Q8IVM7 164 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 RBMXL3Q8N7X1 1067 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 SPATA22Q8NHS9 363 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 DNAAF4Q8WXU2 420 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 TANKQ92844 425 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 ZNF479Q96JC4 524 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 LYZL4Q96KX0 146 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 ZNF385AQ96PM9 386 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 OR1F2PQ96R84 312 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 SLF1Q9BQI6 1058 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 DENND2DQ9H6A0 471 aaPredicted RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 TMEM30AQ9NV96 361 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 DBNLQ9UJU6 430 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 FBXL2Q9UKC9 423 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 PADI3Q9ULW8 664 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 PLAGL1Q9UM63 463 aa3.78□□□□□ -1.8
PTCD3-209ENST00000472044 PTRH2Q9Y3E5 179 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.78□□□□□ -1.8
PTCD3-209ENST00000472044 ZNF541Q9H0D2 1346 aa3.77□□□□□ -1.81
PTCD3-209ENST00000472044 LILRA5A6NI73 299 aa3.77□□□□□ -1.81
PTCD3-209ENST00000472044 HS3ST1O14792 307 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms