RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ASB8Q9H765 288 aa14.67□□□□□ -0.06
COL9A3-209ENST00000469852 MARCH4Q9P2E8 410 aaPredicted RBP14.67□□□□□ -0.06
COL9A3-209ENST00000469852 GMEB2Q9UKD1 530 aa14.67□□□□□ -0.06
COL9A3-209ENST00000469852 APPL1Q9UKG1 709 aa14.67□□□□□ -0.06
COL9A3-209ENST00000469852 TMEM98Q9Y2Y6 226 aa14.67□□□□□ -0.06
COL9A3-209ENST00000469852 PCYT1BQ9Y5K3 369 aaPredicted RBP14.67□□□□□ -0.06
COL9A3-209ENST00000469852 SNX11Q9Y5W9 270 aa14.67□□□□□ -0.06
COL9A3-209ENST00000469852 CACNA1AO00555 2505 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 DMXL1Q9Y485 3027 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 TRBV5-4A0A0C4DH59 114 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 SPTY2D1-AS1A0A0U1RR47 76 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 MAGEB16A2A368 324 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 AGAP14A8MT82 685 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 SCAMP1O15126 338 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 USP1O94782 785 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 VAPBO95292 243 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 FUCA1P04066 466 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 CTSKP43235 329 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 KIAA1024LP59773 190 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 YPEL5P62699 121 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 SPEM2Q0P670 501 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 GRIK2Q13002 908 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 EIF2B5Q13144 721 aaKnown RBP14.66□□□□□ -0.06
COL9A3-209ENST00000469852 SF3A2Q15428 464 aaKnown RBP14.66□□□□□ -0.06
COL9A3-209ENST00000469852 ERCC6LQ2NKX8 1250 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 ZNF542PQ5EBM4 170 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 STEAP4Q687X5 459 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 PDPK2PQ6A1A2 396 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 KIAA0930Q6ICG6 404 aaPredicted RBP14.66□□□□□ -0.06
COL9A3-209ENST00000469852 DOK6Q6PKX4 331 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 SNX20Q7Z614 316 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 LDB1Q86U70 411 aaPredicted RBP14.66□□□□□ -0.06
COL9A3-209ENST00000469852 OR6P1Q8NGX9 317 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 BTN2A2Q8WVV5 523 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 LRRC39Q96DD0 335 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 HIC2Q96JB3 615 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 VPS35Q96QK1 796 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 FGF22Q9HCT0 170 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 MRPL40Q9NQ50 206 aaKnown RBP14.66□□□□□ -0.06
COL9A3-209ENST00000469852 PHPT1Q9NRX4 125 aaPredicted RBP14.66□□□□□ -0.06
COL9A3-209ENST00000469852 SMOXQ9NWM0 555 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 NCDNQ9UBB6 729 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 ZC3H7BQ9UGR2 993 aaKnown RBP14.66□□□□□ -0.06
COL9A3-209ENST00000469852 KLF15Q9UIH9 416 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 SLC30A1Q9Y6M5 507 aa14.66□□□□□ -0.06
COL9A3-209ENST00000469852 CACNB4O00305 520 aaPredicted RBP14.65□□□□□ -0.06
COL9A3-209ENST00000469852 EIF3HO15372 352 aaKnown RBP eCLIP14.65□□□□□ -0.06
COL9A3-209ENST00000469852 SLC25A14O95258 325 aaPredicted RBP14.65□□□□□ -0.06
COL9A3-209ENST00000469852 CEACAM5P06731 702 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 HOXC4P09017 264 aaPredicted RBP14.65□□□□□ -0.06
COL9A3-209ENST00000469852 FAM153BP0C7A2 387 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 ITGALP20701 1170 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 TGM1P22735 817 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 DPP6P42658 865 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 THOP1P52888 689 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 C21orf59P57076 290 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 PRAMEP78395 509 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 B4GALNT1Q00973 533 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 CUL1Q13616 776 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 ITGA9Q13797 1035 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 TEAD4Q15561 434 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 FAM153CQ494X1 144 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 GPRC6AQ5T6X5 926 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 ARMC3Q5W041 872 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 TRMT10BQ6PF06 316 aaKnown RBP14.65□□□□□ -0.06
COL9A3-209ENST00000469852 AFTPHQ6ULP2 937 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 MACC1Q6ZN28 852 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 CAPN12Q6ZSI9 719 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 DDHD1Q8NEL9 900 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 OR4L1Q8NH43 312 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 CEP76Q8TAP6 659 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 OR1E3Q8WZA6 343 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 PDXPQ96GD0 296 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 C9orf72Q96LT7 481 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 FMO2Q99518 471 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 TCEAL2Q9H3H9 227 aaPredicted RBP14.65□□□□□ -0.06
COL9A3-209ENST00000469852 RXFP3Q9NSD7 469 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 SLC6A14Q9UN76 642 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.65□□□□□ -0.06
COL9A3-209ENST00000469852 FAM169AQ9Y6X4 670 aa14.65□□□□□ -0.06
COL9A3-209ENST00000469852 TDRD6O60522 2096 aaKnown RBP14.64□□□□□ -0.07
COL9A3-209ENST00000469852 TOR1BO14657 336 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 PYGLP06737 847 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 POLBP06746 335 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 ZNF806P0C7X5 589 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 MAGEA4P43358 317 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 GPX6P59796 221 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 VSNL1P62760 191 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 CACNG1Q06432 222 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 OVGP1Q12889 678 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 DBN1Q16643 649 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 ALG11Q2TAA5 492 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 ENPP7Q6UWV6 458 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 MARK2Q7KZI7 788 aaKnown RBP14.64□□□□□ -0.07
COL9A3-209ENST00000469852 TAS2R42Q7RTR8 314 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 RABEPKQ7Z6M1 372 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 ADGRG6Q86SQ4 1221 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 SERPINA9Q86WD7 417 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 PHYKPLQ8IUZ5 450 aa14.64□□□□□ -0.07
COL9A3-209ENST00000469852 RBFAQ8N0V3 343 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms