RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TMEM121Q9BTD3 319 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 BOCQ9BWV1 1114 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 GBA3Q9H227 469 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 PCDH9Q9HC56 1237 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 PCDH12Q9NPG4 1184 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 PHTF1Q9UMS5 762 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 CHKBQ9Y259 395 aa11.87□□□□□ -0.51
SQSTM1-206ENST00000466342 CTAGE9A4FU28 777 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 C5orf60A6NFR6 353 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 PGRMC1O00264 195 aaKnown RBP11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 FANCGO15287 622 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 MT-CYBP00156 380 aaPredicted RBP11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 PRLP01236 227 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 PRKCGP05129 697 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 HGFP14210 728 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 JUNDP17535 347 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 STIP1P31948 543 aaKnown RBP11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 IGFALSP35858 605 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 MMP12P39900 470 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 GDF10P55107 478 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 RPL26P61254 145 aaKnown RBP11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 RALGDSQ12967 914 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 EIF2B5Q13144 721 aaKnown RBP11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 SNX1Q13596 522 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 LRRC14Q15048 493 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 USP45Q70EL2 814 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 DPPA4Q7L190 304 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 B3GNT8Q7Z7M8 397 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 ZFAND4Q86XD8 727 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 NDUFAF2Q8N183 169 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 PRELID2Q8N945 189 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 FAM71DQ8N9W8 422 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 TP53I13Q8NBR0 393 aaPredicted RBP11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 CCDC110Q8TBZ0 833 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 PIH1D2Q8WWB5 315 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 RTP4Q96DX8 246 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 TBATAQ96M53 351 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 WRAP53Q9BUR4 548 aaKnown RBP11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 SYNDIG1Q9H7V2 258 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 HOMER3Q9NSC5 361 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 PISDQ9UG56 409 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 FAM153AQ9UHL3 310 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 KLF15Q9UIH9 416 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 RPL26L1Q9UNX3 145 aaKnown RBP11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 ZNF148Q9UQR1 794 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 PPIL1Q9Y3C6 166 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 SDK2Q58EX2 2172 aa11.86□□□□□ -0.51
SQSTM1-206ENST00000466342 A0A0J9YYE9 177 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 ZNF185O15231 689 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 PMPCBO75439 489 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 GCATO75600 419 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 AGFG2O95081 481 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 TRBC1P01850 177 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 PSMB4P28070 264 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 LIG3P49916 1009 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 EPHB1P54762 984 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 ETF1P62495 437 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 MPP3Q13368 585 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 PCSK7Q16549 785 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 P3H1Q32P28 736 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 TPRG1LQ5T0D9 272 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 KDELC1Q6UW63 502 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 MACC1Q6ZN28 852 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 ARHGEF18Q6ZSZ5 1173 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 NYAP1Q6ZVC0 841 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 SLC35F3Q8IY50 421 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 LPCAT1Q8NF37 534 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 LMX1AQ8TE12 382 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 SCRN2Q96FV2 425 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 OXNAD1Q96HP4 312 aaPredicted RBP11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 TMEM74Q96NL1 305 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 PPP1R2P1Q96PQ5 205 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 PHF12Q96QT6 1004 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 GFM1Q96RP9 751 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 MCCC1Q96RQ3 725 aaPredicted RBP11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 TRIB3Q96RU7 358 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 GORASP1Q9BQQ3 440 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 ADGRE3Q9BY15 652 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 MBNL1Q9NR56 388 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 UBP1Q9NZI7 540 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 SPASTQ9UBP0 616 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 B4GALT6Q9UBX8 382 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 PADI4Q9UM07 663 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 DRG1Q9Y295 367 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 SAR1BQ9Y6B6 198 aa11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 ZNF106Q9H2Y7 1883 aaKnown RBP11.85□□□□□ -0.51
SQSTM1-206ENST00000466342 PRAMEF33A0A0G2JMD5 474 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 NPIPB15A6NHN6 443 aaPredicted RBP11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 F5H423 210 aaPredicted RBP11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 PRAMEF10O60809 474 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 ANXA9O76027 345 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 ALPIP09923 528 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 ELFN1P0C7U0 828 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 CYP2A6P11509 494 aaPredicted RBP11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 CTPS1P17812 591 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 ELAVL4P26378 380 aaKnown RBP11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 CD82P27701 267 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 CCKBRP32239 447 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 VIPR1P32241 457 aa11.84□□□□□ -0.51
SQSTM1-206ENST00000466342 BLKP51451 505 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms