RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 UBL4AP11441 157 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 FGF5P12034 268 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 PAX1P15863 534 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 ZNF23P17027 643 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 ATP12AP54707 1039 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 F2RL1P55085 397 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 OLR1P78380 273 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 PDE1CQ14123 709 aaPredicted RBP3.21□□□□□ -1.9
CLK1-204ENST00000432425 RAD9BQ6WBX8 426 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 WDSUB1Q8N9V3 476 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 OR10V1Q8NGI7 309 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 INTS12Q96CB8 462 aaKnown RBP3.21□□□□□ -1.9
CLK1-204ENST00000432425 ZNF501Q96CX3 271 aaPredicted RBP3.21□□□□□ -1.9
CLK1-204ENST00000432425 MMABQ96EY8 250 aaPredicted RBP3.21□□□□□ -1.9
CLK1-204ENST00000432425 SCRN2Q96FV2 425 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 ST6GAL2Q96JF0 529 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 PPP1R13BQ96KQ4 1090 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 STRA6Q9BX79 667 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 LRMDAQ9H2I8 198 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 STK39Q9UEW8 545 aa3.21□□□□□ -1.9
CLK1-204ENST00000432425 A0A1W2PPH5 198 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 PMS2P5A8MQ11 134 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 ANKRD28O15084 1053 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 EIF3DO15371 548 aaKnown RBP eCLIP3.2□□□□□ -1.9
CLK1-204ENST00000432425 PAGE4O60829 102 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 CAVIN2O95810 425 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 APOHP02749 345 aaPredicted RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 SERPINB2P05120 415 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 SPARCP09486 303 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 AHRP35869 848 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 APOBEC1P41238 236 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 COG7P83436 770 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 RPL24P83731 157 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 GOLGA8DPQ0D2H9 430 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 TMEM115Q12893 351 aaPredicted RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 CDONQ4KMG0 1287 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 SLC35E4Q6ICL7 350 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 PAPD4Q6PIY7 484 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 CEACAM20Q6UY09 585 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 R3HCC1LQ7Z5L2 792 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 SMC5Q8IY18 1101 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 SLC44A1Q8WWI5 657 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 STAMBPL1Q96FJ0 436 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 WBP1Q96G27 269 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 TBATAQ96M53 351 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 F2RL3Q96RI0 385 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 SIL1Q9H173 461 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 ZNF696Q9H7X3 374 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 JMJD4Q9H9V9 463 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 PREBQ9HCU5 417 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 TCP11L1Q9NUJ3 509 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 DDX43Q9NXZ2 648 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 MARCH4Q9P2E8 410 aaPredicted RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 GTF2A1LQ9UNN4 478 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 C1orf226A1L170 272 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 CTAGE9A4FU28 777 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 OR5K3A6NET4 321 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 NPIPB15A6NHN6 443 aaPredicted RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 FAM90A26D6RGX4 464 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 NPHP1O15259 732 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 JRKO75564 520 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 SLC25A12O75746 678 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 IPO7O95373 1038 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 INHBAP08476 426 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 CTAGE8P0CG41 777 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 UGT1A1P22309 533 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 NR2F2P24468 414 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 PRCPP42785 496 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 MLLT10P55197 1068 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 ERVK11-1P61568 191 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 ZBED6P86452 979 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 SLC27A1Q6PCB7 646 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 CTAGE4Q8IX94 777 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 ADSSL1Q8N142 457 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 NME8Q8N427 588 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 KLHDC9Q8NEP7 349 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 OR1J2Q8NGS2 313 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 FAM76AQ8TAV0 307 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 UTP15Q8TED0 518 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 PPP4R1Q8TF05 950 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 PHF21AQ96BD5 680 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 NAP1L5Q96NT1 182 aaPredicted RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 MAP7D2Q96T17 732 aa3.2□□□□□ -1.9
CLK1-204ENST00000432425 TFB2MQ9H5Q4 396 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 UBA2Q9UBT2 640 aaPredicted RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 CNOT8Q9UFF9 292 aaKnown RBP3.2□□□□□ -1.9
CLK1-204ENST00000432425 EIF4E1BA6NMX2 242 aaKnown RBP3.19□□□□□ -1.9
CLK1-204ENST00000432425 BUD23O43709 281 aaKnown RBP3.19□□□□□ -1.9
CLK1-204ENST00000432425 CREB3O43889 395 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 CENPBP07199 599 aaPredicted RBP3.19□□□□□ -1.9
CLK1-204ENST00000432425 PAX3P23760 479 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 ICAM3P32942 547 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 CASP6P55212 293 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 CSTF3Q12996 717 aaKnown RBP3.19□□□□□ -1.9
CLK1-204ENST00000432425 ACVR2BQ13705 512 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 PNLIPRP3Q17RR3 467 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 KRTCAP3Q53RY4 240 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 SFMBT2Q5VUG0 894 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 DGLUCYQ7Z3D6 616 aa3.19□□□□□ -1.9
CLK1-204ENST00000432425 RDM1Q8NG50 284 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms