RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ARSDP51689 593 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 C21orf59P57076 290 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 GPX6P59796 221 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 PPP2CBP62714 309 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 PPP2CAP67775 309 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 PEX6Q13608 980 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 INPP5AQ14642 412 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 WSCD2Q2TBF2 565 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 KBTBD12Q3ZCT8 623 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 ATP13A5Q4VNC0 1218 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 PTRHD1Q6GMV3 140 aaKnown RBP10.02□□□□□ -0.81
CD44-207ENST00000425428 UGT3A1Q6NUS8 523 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 STRA8Q7Z7C7 330 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 SERPINA9Q86WD7 417 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 CILP2Q8IUL8 1156 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 TMEFF1Q8IYR6 380 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 NXPE1Q8N323 547 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 RIBC1Q8N443 379 aaPredicted RBP10.02□□□□□ -0.81
CD44-207ENST00000425428 UHMK1Q8TAS1 419 aaKnown RBP10.02□□□□□ -0.81
CD44-207ENST00000425428 KLHDC7BQ96G42 594 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 VPS39Q96JC1 886 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 MYOCQ99972 504 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 FAM96AQ9H5X1 160 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 CD93Q9NPY3 652 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 VPS18Q9P253 973 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 FETUBQ9UGM5 382 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 SLC24A2Q9UI40 661 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 MOSPD1Q9UJG1 213 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 GNPTGQ9UJJ9 305 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 ABCA7Q8IZY2 2146 aa10.02□□□□□ -0.81
CD44-207ENST00000425428 FAM159BA6NKW6 160 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 RASGRF2O14827 1237 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 KPNA5O15131 536 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 INPP4BO15327 924 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 MYCLP1P12525 358 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 VCLP18206 1134 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 KCNA4P22459 653 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 FOXN2P32314 431 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 ARCN1P48444 511 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 CSE1LP55060 971 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 RACK1P63244 317 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 XIAPP98170 497 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 BEND6Q5SZJ8 279 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 TEDDM1Q5T9Z0 273 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 MARK2Q7KZI7 788 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 GALNT7Q86SF2 657 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 IQCHQ86VS3 1027 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 HEATR4Q86WZ0 1026 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 AGGF1Q8N302 714 aaeCLIP10.01□□□□□ -0.81
CD44-207ENST00000425428 DEFB119Q8N690 84 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 TP53I13Q8NBR0 393 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 CENPTQ96BT3 561 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 EID2BQ96D98 161 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 MRRFQ96E11 262 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 TSPAN17Q96FV3 270 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 TSNARE1Q96NA8 513 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 PANX3Q96QZ0 392 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 APOOQ9BUR5 198 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 TXLNGYQ9BZA5 131 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 TRIM39Q9HCM9 518 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 EIF2B4Q9UI10 523 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 RABGEF1Q9UJ41 708 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 PLAAQ9Y263 795 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 KMT2EQ8IZD2 1858 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 TLDC2A0PJX2 215 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 KLHL33A6NCF5 533 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 OR51F1A6NGY5 319 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 PRMT5O14744 637 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A9O60656 530 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 ABCB7O75027 752 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 CDH16O75309 829 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 CDK14O94921 469 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 AP2A2O94973 939 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 FTH1P02794 183 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 ESR1P03372 595 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 IGHV4-34P06331 123 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 HOXC4P09017 264 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 NUDT17P0C025 328 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 H2AFXP16104 143 aaPredicted RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A6P19224 532 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A1P22309 533 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A4P22310 534 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 CD38P28907 300 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A3P35503 534 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 UGT1A5P35504 534 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 SLC1A2P43004 574 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 LEPRP48357 1165 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 POLD2P49005 469 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 BLKP51451 505 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 AFF3P51826 1226 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 CDK3Q00526 305 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 DMWDQ09019 674 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 CTBP1Q13363 440 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 CASP8Q14790 479 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 SMAD1Q15797 465 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 GPRC6AQ5T6X5 926 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 TRMT10BQ6PF06 316 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 KYAT3Q6YP21 454 aaKnown RBP10.01□□□□□ -0.81
CD44-207ENST00000425428 CNTN4Q8IWV2 1026 aa10.01□□□□□ -0.81
CD44-207ENST00000425428 MFSD2AQ8NA29 543 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms