RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 DCDC1P59894 354 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 HERVK_113P63132 956 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 PHEXP78562 749 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 TECRLQ5HYJ1 363 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 TNS4Q8IZW8 715 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 PPFIBP2Q8ND30 876 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ADAMTS19Q8TE59 1207 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 NXPE3Q969Y0 559 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 PDLIM5Q96HC4 596 aaKnown RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 MECRQ9BV79 373 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ERVK-6Q9BXR3 956 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 C8orf33Q9H7E9 229 aaPredicted RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 PPIL1Q9Y3C6 166 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 WNT9AO14904 365 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ATG13O75143 517 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 GMNNO75496 209 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ACRV1P26436 265 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 SULT1C3Q6IMI6 304 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 Q6ZVU0 165 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ZNF765Q7L2R6 523 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 PCYOX1LQ8NBM8 494 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 OR6K2Q8NGY2 324 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 FGF13Q92913 245 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 ASB16Q96NS5 453 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 EPS15L1Q9UBC2 864 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 MAPRE3Q9UPY8 281 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 KCTD3Q9Y597 815 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 SPO11Q9Y5K1 396 aa8.33□□□□□ -1.08
USP54-203ENST00000418501 OAS3Q9Y6K5 1087 aaKnown RBP8.33□□□□□ -1.08
USP54-203ENST00000418501 TTC24A2A3L6 582 aaPredicted RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 H0Y858 1186 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 TULP3O75386 442 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 OTCP00480 354 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 MAPK1P28482 360 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 SERPINB3P29508 390 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 RGRP47804 291 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ARSDP51689 593 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 PLEKHS1Q5SXH7 462 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 TMEM184AQ6ZMB5 413 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 MACC1Q6ZN28 852 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ZCCHC23Q6ZST2 131 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 CDHR3Q6ZTQ4 885 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 DPPA4Q7L190 304 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 NPAS3Q8IXF0 933 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ELSPBP1Q96BH3 223 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 SUDS3Q9H7L9 328 aaPredicted RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 CERS4Q9HA82 394 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 NMRK1Q9NWW6 199 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 SLC17A6Q9P2U8 582 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 TMEM265A0A087WTH1 108 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ENO1P06733 434 aaKnown RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 MPC1LP0DKB6 136 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 NTHL1P78549 312 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 LCP2Q13094 533 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 EML3Q32P44 896 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ARSIQ5FYB1 569 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 LRRC66Q68CR7 880 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 LPCAT2Q7L5N7 544 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 DDIASQ8IXT1 998 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 MDGA1Q8NFP4 955 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ZNF707Q96C28 371 aaPredicted RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 MRPL1Q9BYD6 325 aaKnown RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 NFKBIL1Q9UBC1 381 aaPredicted RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 SCML1Q9UN30 329 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 TET1Q8NFU7 2136 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 VWA8A3KMH1 1905 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 DYTNA2CJ06 578 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 GREM1O60565 184 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ECI2O75521 394 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 SLC25A14O95258 325 aaPredicted RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 CLDN7O95471 211 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 KRT6AP02538 564 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 KRT6BP04259 564 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ITGB7P26010 798 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 KRT6CP48668 564 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 IRF9Q00978 393 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 KDSRQ06136 332 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 SGCGQ13326 291 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 SQLEQ14534 574 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 HNRNPA1L2Q32P51 320 aaKnown RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 FAM78AQ5JUQ0 283 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 RBM20Q5T481 1227 aaKnown RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 CLNKQ7Z7G1 428 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 WBP2Q969T9 261 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 L3HYPDHQ96EM0 354 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 MYEOVQ96EZ4 313 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 MCCC1Q96RQ3 725 aaPredicted RBP8.32□□□□□ -1.08
USP54-203ENST00000418501 BTBD10Q9BSF8 475 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 TRIM15Q9C019 465 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 LRMDAQ9H2I8 198 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 PLAC1Q9HBJ0 212 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 ABCF3Q9NUQ8 709 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 OPTCQ9UBM4 332 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 B4GALT6Q9UBX8 382 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 LNPEPQ9UIQ6 1025 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 SLC12A4Q9UP95 1085 aa8.32□□□□□ -1.08
USP54-203ENST00000418501 DLX3O60479 287 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 PDHA1P08559 390 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 CD1DP15813 335 aa8.31□□□□□ -1.08
USP54-203ENST00000418501 TNFRSF4P43489 277 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms