RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 DCP1BQ8IZD4 617 aaKnown RBP9.8□□□□□ -0.84
SS18-203ENST00000415083 MIER2Q8N344 545 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 TRIML2Q8N7C3 387 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 RHEBL1Q8TAI7 183 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 PROKR1Q8TCW9 393 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 LINC01599Q8WXQ3 324 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 PBXIP1Q96AQ6 731 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 TSPAN17Q96FV3 270 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 COG8Q96MW5 612 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 CDK15Q96Q40 435 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 CSF3RQ99062 836 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 C1orf50Q9BV19 199 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 SEZ6LQ9BYH1 1024 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 PIF1Q9H611 641 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 ABI2Q9NYB9 513 aaPredicted RBP9.8□□□□□ -0.84
SS18-203ENST00000415083 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.8□□□□□ -0.843e-6■■□□□ 11.9
SS18-203ENST00000415083 PCTPQ9UKL6 214 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 FAM50BQ9Y247 325 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 TDRKHQ9Y2W6 561 aaKnown RBP9.8□□□□□ -0.84
SS18-203ENST00000415083 NPEPPSL1A6NEC2 478 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 BBIP1A8MTZ0 92 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 H3BNC9 293 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 SEC24DO94855 1032 aaPredicted RBP9.8□□□□□ -0.84
SS18-203ENST00000415083 MRPL19P49406 292 aaKnown RBP9.8□□□□□ -0.84
SS18-203ENST00000415083 HTR6P50406 440 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 SGSHP51688 502 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 KPNA2P52292 529 aaKnown RBP9.8□□□□□ -0.84
SS18-203ENST00000415083 EFEMP1Q12805 493 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 RAB39AQ14964 217 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 TAF2Q6P1X5 1199 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 ITIH5Q86UX2 942 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 SCN4BQ8IWT1 228 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 CFAP52Q8N1V2 620 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 TRPV3Q8NET8 790 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 KIAA1191Q96A73 305 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 CDKN2AIPNLQ96HQ2 116 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 ZNF599Q96NL3 588 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 HOPXQ9BPY8 73 aaPredicted RBP9.8□□□□□ -0.84
SS18-203ENST00000415083 FBXO10Q9UK96 956 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 CDH7Q9ULB5 785 aa9.8□□□□□ -0.84
SS18-203ENST00000415083 A0A1W2PP18 115 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 ANKRD28O15084 1053 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 MATN1P21941 496 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 TBX4P57082 545 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 LIPEQ05469 1076 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 TUSC3Q13454 348 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 FGD3Q5JSP0 725 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 CLLU1OSQ5K130 101 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 OGFOD2Q6N063 350 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 NANOGP8Q6NSW7 305 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 PSAPL1Q6NUJ1 521 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 SLC2A7Q6PXP3 512 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 TRIM74Q86UV6 250 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 TRIM73Q86UV7 250 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 CLVS1Q8IUQ0 354 aaPredicted RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 SPATA2LQ8IUW3 424 aaPredicted RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 DDIASQ8IXT1 998 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 ZNF786Q8N393 782 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 OR52B6Q8NGF0 335 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 BPIFB1Q8TDL5 484 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 BRINP2Q9C0B6 783 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 NANOGQ9H9S0 305 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 NDUFAF1Q9Y375 327 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 FAM92AA1XBS5 289 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 NCF1BA6NI72 391 aaPredicted RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 NCF1CA8MVU1 366 aaPredicted RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 E2F3O00716 465 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 PRAMEF11O60813 436 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 KERAO60938 352 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 RPP40O75818 363 aaKnown RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 F11P03951 625 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 HMBSP08397 361 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 NCF1P14598 390 aaPredicted RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 ELK4P28324 431 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 FMO4P31512 558 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 KIAA0040Q15053 153 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 FUT11Q495W5 492 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 ZBED5Q49AG3 693 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 ALG1LQ6GMV1 187 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 XAF1Q6GPH4 301 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 TMEM26Q6ZUK4 368 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 ZBTB46Q86UZ6 589 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 C10orf111Q8N326 155 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 BIRC7Q96CA5 298 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 TUBGCP3Q96CW5 907 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 EID2BQ96D98 161 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 CENPNQ96H22 339 aaPredicted RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 SERPINB11Q96P15 392 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 PARK7Q99497 189 aaKnown RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 C1QTNF3Q9BXJ4 246 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 ALG2Q9H553 416 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 TFB2MQ9H5Q4 396 aaKnown RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 HCSTQ9UBK5 93 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 V9GYQ6 96 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 EEDO75530 441 aaKnown RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 PRAMEF12O95522 483 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 HTR1AP08908 422 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 PSMA3P25788 255 aa9.79□□□□□ -0.84
SS18-203ENST00000415083 ADARP55265 1226 aaKnown RBP9.79□□□□□ -0.84
SS18-203ENST00000415083 PLCL1Q15111 1095 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms