RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 FIZ1Q96SL8 496 aa11.9□□□□□ -0.51
PTPRF-205ENST00000414879 TTLL2Q9BWV7 592 aa11.9□□□□□ -0.51
PTPRF-205ENST00000414879 HS3ST4Q9Y661 456 aa11.9□□□□□ -0.51
PTPRF-205ENST00000414879 LAMA4Q16363 1823 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 SOCS5O75159 536 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 TNFAIP8O95379 198 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 RPIAP49247 311 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 SCAPQ12770 1279 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 FSTL4Q6MZW2 842 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 AGMOQ6ZNB7 445 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 SLC22A18Q96BI1 424 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 RNF145Q96MT1 663 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 CCDC177Q9NQR7 707 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-205ENST00000414879 EXD2Q9NVH0 621 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ZDHHC3Q9NYG2 299 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 WFS1O76024 890 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 GSTM1P09488 218 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 CSKP41240 450 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 MBLAC2Q68D91 279 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 UNC5BQ8IZJ1 945 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ZNF276Q8N554 614 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 SMG8Q8ND04 991 aaKnown RBP11.89□□□□□ -0.51
PTPRF-205ENST00000414879 PPCDCQ96CD2 204 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 TRMT61BQ9BVS5 477 aaKnown RBP11.89□□□□□ -0.51
PTPRF-205ENST00000414879 CRTAC1Q9NQ79 661 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ABCB8Q9NUT2 735 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 PCDHGC4Q9Y5F7 938 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 PCDHGA11Q9Y5H2 935 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 SBF2Q86WG5 1849 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 TMEM189-UBE2V1I3L0A0 370 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 WNT9AO14904 365 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ABCB1P08183 1280 aaPredicted RBP11.89□□□□□ -0.51
PTPRF-205ENST00000414879 MS4A13Q5J8X5 152 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ZNF697Q5TEC3 545 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ANKRD22Q5VYY1 191 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 IZUMO2Q6UXV1 221 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 SPATA22Q8NHS9 363 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 CLEC4CQ8WTT0 213 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 MFSD3Q96ES6 412 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 KLHL32Q96NJ5 620 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 EPB41L4BQ9H329 900 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 LRTM1Q9HBL6 345 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ARMCX1Q9P291 453 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 SUFUQ9UMX1 484 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 A0A1W2PRU2 124 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 KLHL33A6NCF5 533 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 NPC1O15118 1278 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 TM7SF2O76062 418 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 IL1R2P27930 398 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 POU5F2Q8N7G0 328 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 DCAKDQ8WVC6 231 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 DNAJC1Q96KC8 554 aaKnown RBP11.89□□□□□ -0.51
PTPRF-205ENST00000414879 MIPEPQ99797 713 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 YIPF3Q9GZM5 350 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ZDHHC18Q9NUE0 388 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ATP6V1HQ9UI12 483 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 ADAM30Q9UKF2 790 aa11.89□□□□□ -0.51
PTPRF-205ENST00000414879 SCAMP3O14828 347 aaKnown RBP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 PPEF2O14830 753 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 MAN1A2O60476 641 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 PSMG1O95456 288 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 CBX6O95503 412 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 EOGTQ5NDL2 527 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 ESRP1Q6NXG1 681 aaKnown RBP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 MED27Q6P2C8 311 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 GJD3Q8N144 294 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 CHCHD4Q8N4Q1 142 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 OR14C36Q8NHC7 312 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 IRF7Q92985 503 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 C19orf60Q96EN9 201 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 MS4A4AQ96JQ5 239 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 CNBD2Q96M20 576 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 PWWP2AQ96N64 755 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 EXOSC4Q9NPD3 245 aaKnown RBP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 PRDM8Q9NQV8 689 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 IL36AQ9UHA7 158 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 FCF1Q9Y324 198 aaKnown RBP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 KIF1CO43896 1103 aaKnown RBP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 PRAMEF11O60813 436 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 ENO2P09104 434 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 ITGAXP20702 1163 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 CYP4F8P98187 520 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 KCNJ11Q14654 390 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 CPSF6Q16630 551 aaKnown RBP eCLIP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 MTX3Q5HYI7 312 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 IYDQ6PHW0 289 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 TNS4Q8IZW8 715 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 SCML4Q8N228 414 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 EFCAB3Q8N7B9 438 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 GDPD5Q8WTR4 605 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 ZNF641Q96N77 438 aaPredicted RBP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 RNPEPL1Q9HAU8 725 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 POPDC3Q9HBV1 291 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 WDR6Q9NNW5 1121 aaKnown RBP11.88□□□□□ -0.51
PTPRF-205ENST00000414879 USE1Q9NZ43 259 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 C3orf18Q9UK00 162 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 AKAP11Q9UKA4 1901 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 RFXANKO14593 260 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 CLOCKO15516 846 aa11.88□□□□□ -0.51
PTPRF-205ENST00000414879 NRP2O60462 931 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms