RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 FOXN2P32314 431 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 RABIFP47224 123 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 YPEL5P62699 121 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 VSNL1P62760 191 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 IRX4P78413 519 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 SPEM2Q0P670 501 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 SEMA3AQ14563 771 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 ZRANB3Q5FWF4 1079 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 PRAMEF14Q5SWL7 426 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 UBAP2Q5T6F2 1119 aaKnown RBP15.81■□□□□ 0.12
HMGA1-204ENST00000401473 SNX20Q7Z614 316 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 IQCHQ86VS3 1027 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 HIC2Q96JB3 615 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 VPS35Q96QK1 796 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 PHACTR1Q9C0D0 580 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 CAPN10Q9HC96 672 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 LRRC4CQ9HCJ2 640 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 PARD6AQ9NPB6 346 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 MARCH4Q9P2E8 410 aaPredicted RBP15.81■□□□□ 0.12
HMGA1-204ENST00000401473 MTRF1LQ9UGC7 380 aaKnown RBP15.81■□□□□ 0.12
HMGA1-204ENST00000401473 ANKRD6Q9Y2G4 727 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 TMEM98Q9Y2Y6 226 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 SLC30A1Q9Y6M5 507 aa15.81■□□□□ 0.12
HMGA1-204ENST00000401473 GOLGA4Q13439 2230 aaKnown RBP15.81■□□□□ 0.12
HMGA1-204ENST00000401473 TRBV5-4A0A0C4DH59 114 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 SPTY2D1-AS1A0A0U1RR47 76 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 HOXC4P09017 264 aaPredicted RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 HOXD12P35452 270 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 POLD2P49005 469 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 GPX6P59796 221 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 OVGP1Q12889 678 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 ITGA9Q13797 1035 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 DUOXA1Q1HG43 343 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 STEAP4Q687X5 459 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 PDPK2PQ6A1A2 396 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 KIAA0930Q6ICG6 404 aaPredicted RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 TRMT10BQ6PF06 316 aaKnown RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 LDB1Q86U70 411 aaPredicted RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 CCNJLQ8IV13 435 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.8■□□□□ 0.122e-8■■■■■ 27.2
HMGA1-204ENST00000401473 NAT14Q8WUY8 206 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 RUBCNQ92622 972 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 CFAP36Q96G28 342 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 SUSD2Q9UGT4 822 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 KLF15Q9UIH9 416 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 GMEB2Q9UKD1 530 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 ARHGEF17Q96PE2 2063 aaPredicted RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 PRR5-ARHGAP8B1AHC4 643 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 TTC4O95801 387 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 PYGLP06737 847 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 MYCLP1P12525 358 aaPredicted RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 CACNG1Q06432 222 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 FZD2Q14332 565 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 KIF19Q2TAC6 998 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 TRIM61Q5EBN2 209 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 GPRC6AQ5T6X5 926 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 SLC23A3Q6PIS1 610 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 CAPN12Q6ZSI9 719 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 C3orf62Q6ZUJ4 267 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 RELL1Q8IUW5 271 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 EIF1ADQ8N9N8 165 aaKnown RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 FAM174AQ8TBP5 190 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 PARD6BQ9BYG5 372 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 MRPL40Q9NQ50 206 aaKnown RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 SMOXQ9NWM0 555 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 NCDNQ9UBB6 729 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 PCYT1BQ9Y5K3 369 aaPredicted RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 SNX11Q9Y5W9 270 aa15.8■□□□□ 0.12
HMGA1-204ENST00000401473 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.8■□□□□ 0.12
HMGA1-204ENST00000401473 TOR1BO14657 336 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 CD3EAPO15446 510 aaKnown RBP15.79■□□□□ 0.12
HMGA1-204ENST00000401473 PIAS1O75925 651 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 CFIP05156 583 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 CEACAM5P06731 702 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 ERVK-10P10266 1014 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 TNFRSF8P28908 595 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 NXPH1P58417 271 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 B4GALNT1Q00973 533 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 NFATC4Q14934 902 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 SF3A2Q15428 464 aaKnown RBP15.79■□□□□ 0.12
HMGA1-204ENST00000401473 KYNUQ16719 465 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 LONRF1Q17RB8 773 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 GPR33Q49SQ1 333 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 HSP90AA5PQ58FG0 334 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 ZNF542PQ5EBM4 170 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 SPANXN3Q5MJ09 141 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 WDR93Q6P2C0 686 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 AFTPHQ6ULP2 937 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 ENPP7Q6UWV6 458 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 SERPINA9Q86WD7 417 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 PALM2Q8IXS6 379 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 NXPE1Q8N323 547 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 CEP76Q8TAP6 659 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 BOCQ9BWV1 1114 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 TRIM39Q9HCM9 518 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 PHPT1Q9NRX4 125 aaPredicted RBP15.79■□□□□ 0.12
HMGA1-204ENST00000401473 C20orf96Q9NUD7 363 aaPredicted RBP15.79■□□□□ 0.12
HMGA1-204ENST00000401473 MOCS1Q9NZB8 636 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 DCHS1Q96JQ0 3298 aa15.79■□□□□ 0.12
HMGA1-204ENST00000401473 ASCC3Q8N3C0 2202 aaKnown RBP15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms