RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TXNDC8Q6A555 127 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SP5Q6BEB4 398 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PM20D1Q6GTS8 502 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TAOK1Q7L7X3 1001 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SPATA21Q7Z572 469 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TIGD4Q8IY51 512 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CFAP52Q8N1V2 620 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 WASF1Q92558 559 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 THRSPQ92748 146 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 DNASE1L2Q92874 299 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 MIB2Q96AX9 1013 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CNOT6LQ96LI5 555 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SPATA13Q96N96 652 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ZNF558Q96NG5 402 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 HNRNPABQ99729 332 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PKP2Q99959 881 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 VN1R3Q9BXE9 311 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 IFIH1Q9BYX4 1025 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GCOM2Q9BZD3 368 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 OSBPL8Q9BZF1 889 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SMOC2Q9H3U7 446 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GOLPH3LQ9H4A5 285 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TRPV5Q9NQA5 729 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CENPMQ9NSP4 180 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SEMA4GQ9NTN9 838 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ARL8BQ9NVJ2 186 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 MTMR4Q9NYA4 1195 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PLK2Q9NYY3 685 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ANKMY1Q9P2S6 941 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TRMT6Q9UJA5 497 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 A4GNTQ9UNA3 340 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 STRAPQ9Y3F4 350 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CMAHPQ9Y471 501 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 RAD54BQ9Y620 910 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ZNF804BA4D1E1 1349 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ZNF335Q9H4Z2 1342 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TRGV11A0A075B6L2 103 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 LRRC72A6NJI9 287 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 VGLL3A8MV65 326 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SOCS6O14544 535 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GMFGO60234 142 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PRDM1O75626 825 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 EPN2O95208 641 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TRUB2O95900 331 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PAHP00439 452 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 AK1P00568 194 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 MT-ATP6P00846 226 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ASGR1P07306 291 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 FAM86B2P0C5J1 330 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SKILP12757 684 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CYP4B1P13584 511 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ITGB6P18564 788 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 ITIH1P19827 911 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PRPH2P23942 346 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SLC6A2P23975 617 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 POU1F1P28069 291 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 EPHA3P29320 983 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CCND2P30279 289 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PPIFP30405 207 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CTNNB1P35222 781 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 IDUAP35475 653 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SOAT1P35610 550 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GJC1P36383 396 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 RPS6KA3P51812 740 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 VAV2P52735 878 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 MZT1Q08AG7 82 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 DPYSQ14117 519 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 FGFBP1Q14512 234 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 IL13RA2Q14627 380 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GLE1Q53GS7 698 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 XKR9Q5GH70 373 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 EPHA10Q5JZY3 1008 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 C6orf163Q5TEZ5 329 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PLA2G4FQ68DD2 849 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SLC9A4Q6AI14 798 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TAPT1Q6NXT6 567 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 AFTPHQ6ULP2 937 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TMEM108Q6UXF1 575 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SLC36A4Q6YBV0 504 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 GRASPQ7Z6J2 395 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TAF8Q7Z7C8 310 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TADA2BQ86TJ2 420 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SLC15A3Q8IY34 581 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 RASGEF1CQ8N431 466 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CPXM2Q8N436 756 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 FAM133AQ8N9E0 248 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 FAM98AQ8NCA5 519 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 RNASE8Q8TDE3 154 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TRAF3IP1Q8TDR0 691 aaPredicted RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 CHURC1Q8WUH1 139 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TMEM186Q96B77 213 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 EDC3Q96F86 508 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 EEF2KMTQ96G04 330 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 RBM14Q96PK6 669 aaKnown RBP4.12□□□□□ -1.75
HMGB1-204ENST00000399489 TRIB1Q96RU8 372 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SMOQ99835 787 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 EGFL8Q99944 293 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 SEMA3CQ99985 751 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 LZTS2Q9BRK4 669 aa4.12□□□□□ -1.75
HMGB1-204ENST00000399489 PTDSS2Q9BVG9 487 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms