RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ST8SIA6P61647 398 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 RALGDSQ12967 914 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 RCN2Q14257 317 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 ZNF234Q14588 700 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 EIF4HQ15056 248 aaKnown RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 HNRNPA1L2Q32P51 320 aaKnown RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 FNDC3BQ53EP0 1204 aaKnown RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 ARL13AQ5H913 290 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 CES5AQ6NT32 575 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 TRIM67Q6ZTA4 783 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 HSD11B1LQ7Z5J1 315 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 TTC7BQ86TV6 843 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 NXPE1Q8N323 547 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 CPA6Q8N4T0 437 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 CLDN19Q8N6F1 224 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 PPP4R1Q8TF05 950 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 SREK1Q8WXA9 508 aaKnown RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 ELSPBP1Q96BH3 223 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 LRIG1Q96JA1 1093 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 ATOH8Q96SQ7 321 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 OSBPL1AQ9BXW6 950 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 DERL2Q9GZP9 239 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 TMEM245Q9H330 911 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 CYP4F12Q9HCS2 524 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 DKK3Q9UBP4 350 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 TMPRSS11EQ9UL52 423 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 C16orf96A6NNT2 1141 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 IPO13O94829 963 aaKnown RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 MTHFD2P13995 350 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 RPS3P23396 243 aaKnown RBP eCLIP13.67□□□□□ -0.222e-7■■■□□ 15.4
PTPRF-202ENST00000372405 MPSTP25325 297 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 VIPR1P32241 457 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 PTPN5P54829 565 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 ACTN3Q08043 901 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 TUBB3Q13509 450 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 GPR33Q49SQ1 333 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 ATP13A5Q4VNC0 1218 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 RPS27LQ71UM5 84 aaKnown RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 PARS2Q7L3T8 475 aaKnown RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 CLNKQ7Z7G1 428 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 GBP7Q8N8V2 638 aaPredicted RBP13.67□□□□□ -0.22
PTPRF-202ENST00000372405 KDM1BQ8NB78 822 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 LKAAEAR1Q8TD35 194 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 PLEKHG4BQ96PX9 1271 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 SYTL2Q9HCH5 934 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 CD84Q9UIB8 345 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 CRLS1Q9UJA2 301 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 COMMD10Q9Y6G5 202 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 TICRRQ7Z2Z1 1910 aa13.67□□□□□ -0.22
PTPRF-202ENST00000372405 SPINT1O43278 529 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 PYGLP06737 847 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 CHRM3P20309 590 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 GDI1P31150 447 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 LIG3P49916 1009 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 B4GALNT1Q00973 533 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 SETDB1Q15047 1291 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 VWA5B1Q5TIE3 1220 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 WDR75Q8IWA0 830 aaKnown RBP13.66□□□□□ -0.22
PTPRF-202ENST00000372405 YAF2Q8IY57 180 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 CPNE9Q8IYJ1 553 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 RBFAQ8N0V3 343 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 CCNYL1Q8N7R7 359 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 RHEBL1Q8TAI7 183 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 AGR3Q8TD06 166 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 EEF1AKMT1Q8WVE0 214 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 KIAA1191Q96A73 305 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 PHF21BQ96EK2 531 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 MSLNLQ96KJ4 702 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 FAM129BQ96TA1 746 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 CDH19Q9H159 772 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 ABCG8Q9H221 673 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 PRO3102Q9H379 93 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 TFB2MQ9H5Q4 396 aaKnown RBP13.66□□□□□ -0.22
PTPRF-202ENST00000372405 FBRSL1Q9HCM7 1045 aaKnown RBP13.66□□□□□ -0.22
PTPRF-202ENST00000372405 CLDND1Q9NY35 253 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 TRMT6Q9UJA5 497 aaKnown RBP13.66□□□□□ -0.22
PTPRF-202ENST00000372405 HAO1Q9UJM8 370 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 PCDHB1Q9Y5F3 818 aa13.66□□□□□ -0.22
PTPRF-202ENST00000372405 EDDM13A0A1B0GTR0 161 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 TBC1D3BA6NDS4 549 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 UBXN8O00124 270 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 MYO1CO00159 1063 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 CDC7O00311 574 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 NPHS1O60500 1241 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 T-ENOLP0DO92 83 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ZNF30P17039 623 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ZNF7P17097 686 aaPredicted RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 MMP12P39900 470 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 IL12RB1P42701 662 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 NCALDP61601 193 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 GRIN2CQ14957 1233 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 TSNQ15631 228 aaKnown RBP13.65□□□□□ -0.22
PTPRF-202ENST00000372405 MAPK15Q8TD08 544 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 HCAR2Q8TDS4 363 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 EXT2Q93063 718 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 SCAMP4Q969E2 229 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 ACOX2Q99424 681 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 SHCBP1LQ9BZQ2 653 aa13.65□□□□□ -0.22
PTPRF-202ENST00000372405 NMUR2Q9GZQ4 415 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms