RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PREBQ9HCU5 417 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 SMOXQ9NWM0 555 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 ZDHHC3Q9NYG2 299 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 USP36Q9P275 1121 aaKnown RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3DA0A087WVF3 549 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3IA0A087WXS9 549 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3EA0A087X179 549 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3KA0A087X1G2 549 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 A0A1W2PQU0 124 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3FA6NER0 549 aaPredicted RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3LB9A6J9 549 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 RNGTTO60942 597 aaKnown RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 SPAG7O75391 227 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 DCNP07585 359 aaKnown RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3HP0C7X1 549 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TYK2P29597 1187 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TAS2R39P59534 338 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 RPS21P63220 83 aaKnown RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 POU4F1Q01851 419 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 DPTQ07507 201 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 FGL2Q14314 439 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 SETMARQ53H47 684 aaPredicted RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 TMEM31Q5JXX7 168 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3GQ6DHY5 549 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3CQ6IPX1 549 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 TBC1D3Q8IZP1 549 aaPredicted RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 OLFM1Q99784 485 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 AARSD1Q9BTE6 412 aaKnown RBP19.73■□□□□ 0.75
CLN3-205ENST00000359984 P2RY12Q9H244 342 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 VWA7Q9Y334 891 aa19.73■□□□□ 0.75
CLN3-205ENST00000359984 SOD1P00441 154 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 ACSL1P33121 698 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 CCNFP41002 786 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 CSRP3P50461 194 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 CDKN2DP55273 166 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 PPP2R2AP63151 447 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 PPARDQ03181 441 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 TMEM259Q4ZIN3 620 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 PPM1JQ5JR12 505 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 GPRC6AQ5T6X5 926 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 KIAA1161Q6NSJ0 714 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 NLRP8Q86W28 1048 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 CEP97Q8IW35 865 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 RBFAQ8N0V3 343 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 BANPQ8N9N5 519 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 ACMSDQ8TDX5 336 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 BTN2A2Q8WVV5 523 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 KDM4CQ9H3R0 1056 aa19.72■□□□□ 0.75
CLN3-205ENST00000359984 NUMA1Q14980 2115 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 FAM47DPA6NHR8 397 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 K7ESM1 405 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 PRMT5O14744 637 aaPredicted RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 ZNF7P17097 686 aaPredicted RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 ADARP55265 1226 aaKnown RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 SIGLEC14Q08ET2 396 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 MTAPQ13126 283 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 PDE1CQ14123 709 aaPredicted RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 ITIH4Q14624 930 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 AGERQ15109 404 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 NEK5Q6P3R8 708 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 HORMAD1Q86X24 394 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 FAM76AQ8TAV0 307 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 KLK6Q92876 244 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 VPS35Q96QK1 796 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 COPS8Q99627 209 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 C1QTNF2Q9BXJ5 285 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 BTBD1Q9H0C5 482 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 KCNK9Q9NPC2 374 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 PCMTD2Q9NV79 361 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 IGLV3-16A0A075B6K0 115 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 PHGDHO43175 533 aaKnown RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 PAK4O96013 591 aaPredicted RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 IGLV3-19P01714 112 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 C2P06681 752 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 PKMP14618 531 aaKnown RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 STMN1P16949 149 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 GMPRP36959 345 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 B4GALNT1Q00973 533 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 TIAL1Q01085 375 aaKnown RBP eCLIP19.71■□□□□ 0.75
CLN3-205ENST00000359984 MPP2Q14168 576 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 ZKSCAN8Q15776 578 aaPredicted RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 WSCD2Q2TBF2 565 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 CTSL3PQ5NE16 218 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 RAET1GQ6H3X3 334 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 FAM45BPQ6NSW5 357 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 SPNS2Q8IVW8 549 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 FAM45AQ8TCE6 357 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 NAT14Q8WUY8 206 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 EDAQ92838 391 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 GLYATL1Q969I3 302 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 ALKBH8Q96BT7 664 aaKnown RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 SELENOSQ9BQE4 189 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 CCDC68Q9H2F9 335 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 SSU72Q9NP77 194 aaKnown RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 KCTD5Q9NXV2 234 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 CNOT6Q9ULM6 557 aaKnown RBP19.71■□□□□ 0.75
CLN3-205ENST00000359984 PRSS21Q9Y6M0 314 aa19.71■□□□□ 0.75
CLN3-205ENST00000359984 A0A096LPK6 155 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 TMEM120BA0PK00 339 aa19.7■□□□□ 0.74
CLN3-205ENST00000359984 TYROBPO43914 113 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms