RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 RAI2Q9Y5P3 530 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 UBE2QL1A1L167 161 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 GABRDO14764 452 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 ACSL4O60488 711 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 ELNP15502 786 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 SLC5A3P53794 718 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 ZNF280AP59817 542 aaPredicted RBP11.69□□□□□ -0.54
COL9A1-202ENST00000357250 FSTL1Q12841 308 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 GLYATQ6IB77 296 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 CNSTQ6PJW8 725 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 UBASH3BQ8TF42 649 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 TWIST2Q8WVJ9 160 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 KLHL5Q96PQ7 755 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 PLEKHG4BQ96PX9 1271 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 SLC27A5Q9Y2P5 690 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 SPEF2Q9C093 1822 aa11.69□□□□□ -0.54
COL9A1-202ENST00000357250 GLTPD2A6NH11 291 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 MPZL2O60487 215 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CLDN9O95484 217 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 GLUD1P00367 558 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SERPINA1P01009 418 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 AMD1P17707 334 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CHRNB2P17787 502 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 DNAJB1P25685 340 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 RFTN1Q14699 578 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 TARBP2Q15633 366 aaKnown RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ASTE1Q2TB18 679 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ARL13AQ5H913 290 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 FAM151BQ6UXP7 276 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 THAP5Q7Z6K1 395 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 RAVER1Q8IY67 606 aaKnown RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ZNF567Q8N184 647 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 FITM2Q8N6M3 262 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 TTLL2Q9BWV7 592 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 PHPT1Q9NRX4 125 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 INTS10Q9NVR2 710 aaKnown RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 GRHL1Q9NZI5 618 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CNTN6Q9UQ52 1028 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 NR2E3Q9Y5X4 410 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 LYVE1Q9Y5Y7 322 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 LRRC37A3O60309 1634 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 H3BNH8 94 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 GPR25O00155 361 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 OR10H2O60403 315 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 TRBC1P01850 177 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 PIRTP0C851 137 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SELPP16109 830 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 GPD2P43304 727 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 HNMTP50135 292 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CCR4P51679 360 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 DAOAP59103 153 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ABRQ12979 859 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ITGA7Q13683 1181 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 QPRTQ15274 297 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 DPYSL2Q16555 572 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 DET1Q7L5Y6 550 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 PIGWQ7Z7B1 504 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 BANPQ8N9N5 519 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 FAM47BQ8NA70 645 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 PLD4Q96BZ4 506 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SMAD5Q99717 465 aaKnown RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SIX2Q9NPC8 291 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ZNHIT2Q9UHR6 403 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 PRRC2BQ5JSZ5 2229 aaKnown RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ELOVL7A1L3X0 281 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CCDC182A6NF36 153 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SH3BGRLO75368 114 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 TGFBR2P37173 567 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 PTGER3P43115 390 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ATP12AP54707 1039 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SP2Q02086 613 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 GNA12Q03113 381 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SULT1C3Q6IMI6 304 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CPNE8Q86YQ8 564 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SVOPLQ8N434 492 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 DPF3Q92784 378 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 NXNL1Q96CM4 212 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CENPNQ96H22 339 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 NPAS2Q99743 824 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 WDR55Q9H6Y2 383 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CMTM6Q9NX76 183 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 GULP1Q9UBP9 304 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 MRTO4Q9UKD2 239 aaKnown RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 C1RP00736 705 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 IL1BP01584 269 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 GABRR2P28476 465 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ACTR3P61158 418 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 DLG1Q12959 904 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CBX2Q14781 532 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 DPY19L1Q2PZI1 675 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CCDC185Q8N715 623 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 VMP1Q96GC9 406 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 EXOC2Q96KP1 924 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 CHRAC1Q9NRG0 131 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 SMPD3Q9NY59 655 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 MBD2Q9UBB5 411 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 FBXW11Q9UKB1 542 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 ZNF490Q9ULM2 529 aaPredicted RBP11.68□□□□□ -0.54
COL9A1-202ENST00000357250 OR10H1Q9Y4A9 318 aa11.68□□□□□ -0.54
COL9A1-202ENST00000357250 PHRF1Q9P1Y6 1649 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms