RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 EFEMP2O95967 443 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 PKMP14618 531 aaKnown RBP19.23■□□□□ 0.67
COL9A3-201ENST00000343916 ACADVLP49748 655 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 YBX1P67809 324 aaKnown RBP19.23■□□□□ 0.67
COL9A3-201ENST00000343916 OR6K2Q8NGY2 324 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 ADGRE3Q9BY15 652 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 CD300AQ9UGN4 299 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 YIPF1Q9Y548 306 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 PCDHB9Q9Y5E1 797 aa19.23■□□□□ 0.67
COL9A3-201ENST00000343916 TBL1XO60907 577 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 ETS2P15036 469 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 CHRM3P20309 590 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 CAPN3P20807 821 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 DIO3P55073 304 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 C6orf10Q5SRN2 563 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 ANKS6Q68DC2 871 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 SCIMPQ6UWF3 145 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 TICAM1Q8IUC6 712 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 TMEM102Q8N9M5 508 aaPredicted RBP19.22■□□□□ 0.67
COL9A3-201ENST00000343916 WFDC5Q8TCV5 224 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 CCDC97Q96F63 343 aaPredicted RBP19.22■□□□□ 0.67
COL9A3-201ENST00000343916 TCF12Q99081 682 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 TMEM181Q9P2C4 612 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 ZNF225Q9UK10 706 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 BACE2Q9Y5Z0 518 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 ANKRD33BA6NCL7 494 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 CRCPO75575 148 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 CTPS1P17812 591 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 VEGFBP49765 207 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 ZXDBP98169 803 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 GK3PQ14409 553 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 C8orf82Q6P1X6 216 aaPredicted RBP19.22■□□□□ 0.67
COL9A3-201ENST00000343916 TAS2R42Q7RTR8 314 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 CPNE9Q8IYJ1 553 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 CD200R1Q8TD46 325 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 EID2BQ96D98 161 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 LINGO1Q96FE5 620 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 TRIM8Q9BZR9 551 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 MAP10Q9P2G4 905 aa19.22■□□□□ 0.67
COL9A3-201ENST00000343916 K7ERQ8 282 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 VPS26AO75436 327 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 PYGLP06737 847 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 MBL2P11226 248 aaPredicted RBP19.21■□□□□ 0.67
COL9A3-201ENST00000343916 ATP4BP51164 291 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 HK3P52790 923 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 ATP6V0D1P61421 351 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 SMAD3P84022 425 aaKnown RBP19.21■□□□□ 0.67
COL9A3-201ENST00000343916 ILF2Q12905 390 aaKnown RBP19.21■□□□□ 0.67
COL9A3-201ENST00000343916 LIN52Q52LA3 116 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 UGT2A3Q6UWM9 527 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 MYRFLQ96LU7 910 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 SPATA16Q9BXB7 569 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 TM6SF2Q9BZW4 377 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 HIPK3Q9H422 1215 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 RETREG1Q9H6L5 497 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 UBAP1Q9NZ09 502 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 TRMT6Q9UJA5 497 aaKnown RBP19.21■□□□□ 0.67
COL9A3-201ENST00000343916 AP4S1Q9Y587 144 aa19.21■□□□□ 0.67
COL9A3-201ENST00000343916 C15orf38-AP3S2A0A0A6YYH1 394 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 KLHL33A6NCF5 533 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 ABLIM3O94929 683 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 RPS17P08708 135 aaKnown RBP19.2■□□□□ 0.66
COL9A3-201ENST00000343916 ALPIP09923 528 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 GRIA2P42262 883 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 TTPAP49638 278 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 NCEH1Q6PIU2 408 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 ARPINQ7Z6K5 226 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 RNF168Q8IYW5 571 aaPredicted RBP19.2■□□□□ 0.66
COL9A3-201ENST00000343916 MIER2Q8N344 545 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 TTC30BQ8N4P2 665 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 ADCY4Q8NFM4 1077 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 AUTS2Q8WXX7 1259 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 LRTOMTQ8WZ04 291 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 LHX3Q9UBR4 397 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 AP4B1Q9Y6B7 739 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 E5RI56 91 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 RHOAP61586 193 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 RHDQ02161 417 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 CAPRIN1Q14444 709 aaKnown RBP19.2■□□□□ 0.66
COL9A3-201ENST00000343916 SPOUT1Q5T280 376 aaKnown RBP19.2■□□□□ 0.66
COL9A3-201ENST00000343916 TMEM150AQ86TG1 271 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 SYVN1Q86TM6 617 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 NKAPQ8N5F7 415 aaKnown RBP19.2■□□□□ 0.66
COL9A3-201ENST00000343916 SLAIN1Q8ND83 568 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 SLCO4A1Q96BD0 722 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 ZFRQ96KR1 1074 aaKnown RBP19.2■□□□□ 0.66
COL9A3-201ENST00000343916 ACOX2Q99424 681 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 FEM1AQ9BSK4 669 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 ANAPC1Q9H1A4 1944 aa19.2■□□□□ 0.66
COL9A3-201ENST00000343916 SYCE1LA8MT33 242 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 C8BP07358 591 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 LBPP18428 481 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 CHN2P52757 468 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 CDKL1Q00532 357 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 NRF1Q16656 503 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 SAMD4BQ5PRF9 694 aaKnown RBP19.19■□□□□ 0.66
COL9A3-201ENST00000343916 C6orf52Q5T4I8 152 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 FAM117BQ6P1L5 589 aa19.19■□□□□ 0.66
COL9A3-201ENST00000343916 ST13P4Q8IZP2 240 aaPredicted RBP19.19■□□□□ 0.66
COL9A3-201ENST00000343916 FAM110BQ8TC76 370 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms