RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 COL9A1P20849 921 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 TEAD1P28347 426 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 CA5AP35218 305 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 ETV3P41162 512 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 NSG1P42857 185 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 SERPINB4P48594 390 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 KPNA2P52292 529 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 TAS2R38P59533 333 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 TFF2Q03403 129 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 SFSWAPQ12872 951 aaKnown RBP14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 ZNF284Q2VY69 593 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 ATP13A5Q4VNC0 1218 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 CTSL3PQ5NE16 218 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 HHATQ5VTY9 493 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 TAS2R42Q7RTR8 314 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 PNPLA1Q8N8W4 532 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 DDHD1Q8NEL9 900 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 RAB3IL1Q8TBN0 382 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 RDH11Q8TC12 318 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 ZNF317Q96PQ6 595 aaPredicted RBP14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 FAM111AQ96PZ2 611 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 ABCG8Q9H221 673 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 CCDC68Q9H2F9 335 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 FAM96AQ9H5X1 160 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 ARHGEF3Q9NR81 526 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 TAS2R13Q9NYV9 303 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 SIRPGQ9P1W8 387 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 CRLS1Q9UJA2 301 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 MID2Q9UJV3 735 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 TMPRSS11EQ9UL52 423 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 FZD4Q9ULV1 537 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 PLXNA2O75051 1894 aa14.8□□□□□ -0.04
CCDC88C-202ENST00000334448 UBA6A0AVT1 1052 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 KLF11O14901 512 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 GPR39O43194 453 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 OR1I1O60431 355 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 PYGLP06737 847 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 CHRNB1P11230 501 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 ZNF37AP17032 561 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 UGT1A6P19224 532 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 UGT1A1P22309 533 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 UGT1A4P22310 534 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 UGT1A3P35503 534 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 UGT1A5P35504 534 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 SKIV2L2P42285 1042 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 STARD6P59095 220 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 LRRC32Q14392 662 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 LRRC14Q15048 493 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 TERF2Q15554 542 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 SEPT7Q16181 437 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 CRY1Q16526 586 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 SETMARQ53H47 684 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 EYSQ5T1H1 3165 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 N4BP2L1Q5TBK1 243 aaPredicted RBP14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 RAPH1Q70E73 1250 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 KBTBD6Q86V97 674 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 PLD6Q8N2A8 252 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 MGARPQ8TDB4 240 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 COPS8Q99627 209 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 CLPBQ9H078 707 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 LATS2Q9NRM7 1088 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 IGSF5Q9NSI5 407 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 GNPTGQ9UJJ9 305 aa14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 MRPS17Q9Y2R5 130 aaKnown RBP14.79□□□□□ -0.04
CCDC88C-202ENST00000334448 TARM1B6A8C7 271 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 C10orf142B7Z368 130 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 PLRG1O43660 514 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 VPS26AO75436 327 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 RECQL5O94762 991 aaPredicted RBP14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 AP2A2O94973 939 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 TOP3BO95985 862 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 SOD1P00441 154 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 DNTTP04053 509 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 BPGMP07738 259 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 FMO4P31512 558 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 IRF9Q00978 393 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 ACOX1Q15067 660 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 FAM83EQ2M2I3 478 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 MAP7D1Q3KQU3 841 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 TTC31Q49AM3 519 aaPredicted RBP14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 GPRC6AQ5T6X5 926 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 AGAP9Q5VTM2 703 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 NEK5Q6P3R8 708 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 TBC1D1Q86TI0 1168 aaPredicted RBP14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 TMPRSS6Q8IU80 811 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 TMEM151AQ8N4L1 468 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 HDDC3Q8N4P3 179 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 RPLP0P6Q8NHW5 317 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 CXorf40AQ8TE69 158 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 BTN2A2Q8WVV5 523 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 DYDC1Q8WWB3 177 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 ASB12Q8WXK4 309 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 SCAMP4Q969E2 229 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 AP2M1Q96CW1 435 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 NUS1Q96E22 293 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 SHDQ96IW2 340 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 TSNARE1Q96NA8 513 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 RIOK2Q9BVS4 552 aaKnown RBP14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 SPATA16Q9BXB7 569 aa14.78□□□□□ -0.04
CCDC88C-202ENST00000334448 EPN3Q9H201 632 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms