RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 RFXANKO14593 260 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 KHDRBS3O75525 346 aaKnown RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 UGT2B4P06133 528 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 FGFR1P11362 822 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 ITIH1P19827 911 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 TYMPP19971 482 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 AZGP1P25311 298 aaKnown RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 BRCC3P46736 316 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 POU5F1Q01860 360 aaKnown RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 GNA12Q03113 381 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 MERTKQ12866 999 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 DLG1Q12959 904 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 BHLHB9Q6PI77 547 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 TMEM110Q86TL2 294 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 TMEM159Q96B96 161 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 P2RY11Q96G91 374 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 YTHDF1Q9BYJ9 559 aaKnown RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 ABCB9Q9NP78 766 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 CNTNAP1P78357 1384 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 IRGMA1A4Y4 181 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 CARNS1A5YM72 827 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 CCRL2O00421 344 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 MDM4O15151 490 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 DHX15O43143 795 aaKnown RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 TSPAN1O60635 241 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 DNAJA2O60884 412 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 OR56A5P0C7T3 313 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 PRG2P13727 222 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 SLC7A1P30825 629 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 ARL4DP49703 201 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 DLG2Q15700 870 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 MOGQ16653 247 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 BRMS1LQ5PSV4 323 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 ARMC6Q6NXE6 501 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 OR52K2Q8NGK3 314 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 TOP1MTQ969P6 601 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 SERAC1Q96JX3 654 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 PANX1Q96RD7 426 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 ALG2Q9H553 416 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 PHF11Q9UIL8 331 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 COQ4Q9Y3A0 265 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 GLTPD2A6NH11 291 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 FFAR3O14843 346 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 GPR42O15529 346 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 ORC5O43913 435 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 OR10H3O60404 316 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 IPO13O94829 963 aaKnown RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 ECDO95905 644 aaPredicted RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 PENKP01210 267 aaPredicted RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 ADRA1BP35368 520 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 IRF8Q02556 426 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 MBTD1Q05BQ5 628 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 TGM3Q08188 693 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 CHADLQ6NUI6 762 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 POTEHQ6S545 545 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 ZYG11AQ6WRX3 759 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 TRIM48Q8IWZ4 208 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 DAW1Q8N136 415 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 SVOPLQ8N434 492 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 ZNF781Q8N8C0 355 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 EXD2Q9NVH0 621 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 PDP1Q9P0J1 537 aaPredicted RBP11.45□□□□□ -0.58
VPS39-201ENST00000318006 VWA7Q9Y334 891 aa11.45□□□□□ -0.58
VPS39-201ENST00000318006 M0QX08 132 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 UBXN8O00124 270 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 MTRF1O75570 445 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 C9P02748 559 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 PPIBP23284 216 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 SERPINA4P29622 427 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 BOP1Q14137 746 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 OOSP2Q86WS3 158 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 PDSS2Q86YH6 399 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 ZC3H7AQ8IWR0 971 aaKnown RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 CCDC185Q8N715 623 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 SIPA1Q96FS4 1042 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 ZNF558Q96NG5 402 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 EHD1Q9H4M9 534 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 FAM124BQ9H5Z6 455 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 MCUBQ9NWR8 336 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 WRAP73Q9P2S5 460 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 PCDHA2Q9Y5H9 948 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 LRRC37A3O60309 1634 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 ZBTB14O43829 449 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 MTA2O94776 668 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 ENO2P09104 434 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 CSH1P0DML2 217 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 CSH2P0DML3 217 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 CDKN2BP42772 138 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 FLT3LGP49771 235 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 VPS26BQ4G0F5 336 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 PACRGLQ8N7B6 248 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 FAM156AQ8NDB6 213 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 PPM1MQ96MI6 270 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 CSPG4P5Q96PW8 444 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 SEMA3CQ99985 751 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 YIPF2Q9BWQ6 316 aa11.44□□□□□ -0.58
VPS39-201ENST00000318006 GPN1Q9HCN4 374 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 RCOR3Q9P2K3 495 aaPredicted RBP11.44□□□□□ -0.58
VPS39-201ENST00000318006 NFKBIL1Q9UBC1 381 aaPredicted RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms