RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 HDDC3Q8N4P3 179 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 CNTD1Q8N815 330 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 HTRA1Q92743 480 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 LINGO1Q96FE5 620 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 SEC14L4Q9UDX3 406 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 TMEM5Q9Y2B1 443 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 FADS3Q9Y5Q0 445 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 TLL2Q9Y6L7 1015 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 LACTBL1A8MY62 500 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 UROSP10746 265 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 RBL1P28749 1068 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 ARL3P36405 182 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 DET1Q7L5Y6 550 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 MTMR8Q96EF0 704 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 GPATCH1Q9BRR8 931 aaKnown RBP15.4■□□□□ 0.06
HCFC1-201ENST00000310441 MARCH7Q9H992 704 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 GLRA2P23416 452 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 CRHR1P34998 444 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 RNF19BQ6ZMZ0 732 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 NSMCE3Q96MG7 304 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 TRIM64A6NGJ6 449 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 OR1I1O60431 355 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 DDX6P26196 483 aaKnown RBP eCLIP15.4■□□□□ 0.065e-7■■■■■ 30
HCFC1-201ENST00000310441 RHEBQ15382 184 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 ADAMTS15Q8TE58 950 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 ANKRA2Q9H9E1 313 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 TRNAU1APQ9NX07 287 aaKnown RBP15.4■□□□□ 0.06
HCFC1-201ENST00000310441 ENTPD5O75356 428 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 SSR2P43308 183 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 ARPC4P59998 168 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 TMEM119Q4V9L6 283 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 SEZ6Q53EL9 994 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 SLC9A4Q6AI14 798 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 ZNF433Q8N7K0 673 aaPredicted RBP15.4■□□□□ 0.06
HCFC1-201ENST00000310441 FAM47BQ8NA70 645 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 DNASE1L2Q92874 299 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 SGK2Q9HBY8 427 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 DNAJC28Q9NX36 388 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 PRAMEF33A0A0G2JMD5 474 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 PRAMEF10O60809 474 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 SCN2BO60939 215 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 CD247P20963 164 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 IKBKEQ14164 716 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 SLC9B1Q4ZJI4 515 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 LRRC20Q8TCA0 184 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 CEP41Q9BYV8 373 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 TNKS2Q9H2K2 1166 aa15.4■□□□□ 0.06
HCFC1-201ENST00000310441 CLDN25C9JDP6 229 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 DDX3XO00571 662 aaKnown RBP eCLIP15.39■□□□□ 0.067e-8■■■■□ 20.8
HCFC1-201ENST00000310441 ITPKBP27987 946 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 RGS8P57771 180 aaPredicted RBP15.39■□□□□ 0.06
HCFC1-201ENST00000310441 PARP15Q460N3 678 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 CCNYL2Q5T2Q4 361 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 NUP54Q7Z3B4 507 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 P2RY8Q86VZ1 359 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 C11orf65Q8NCR3 313 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 PCDH10Q9P2E7 1040 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 IKZF2Q9UKS7 526 aa15.39■□□□□ 0.06
HCFC1-201ENST00000310441 PPRC1Q5VV67 1664 aaKnown RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 SHROOM3Q8TF72 1996 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 ZNF3P17036 446 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 MND1Q9BWT6 205 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 A0A0J9YYE9 177 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 OR2AT4A6NND4 320 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 IPO13O94829 963 aaKnown RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 C22orf31O95567 290 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 ATF4P18848 351 aaPredicted RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 BDNFP23560 247 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 GNPDA1P46926 289 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 SRSF11Q05519 484 aaKnown RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 ARL10Q8N8L6 244 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 ZSWIM2Q8NEG5 633 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 ART4Q93070 314 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 AARSD1Q9BTE6 412 aaKnown RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 TSPAN3O60637 253 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 CLPXO76031 633 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 SLC25A14O95258 325 aaPredicted RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 ERP29P30040 261 aaKnown RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 RPS9P46781 194 aaKnown RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 CES3Q6UWW8 571 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 LRTM1Q9HBL6 345 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 FANCFQ9NPI8 374 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 SPEF2Q9C093 1822 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 SLC33A1O00400 549 aaPredicted RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 PRKCIP41743 596 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 SLC25A3Q00325 362 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 CFL2Q9Y281 166 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 ELOVL7A1L3X0 281 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 MANSC4A6NHS7 340 aaPredicted RBP15.39■□□□□ 0.05
HCFC1-201ENST00000310441 PCP4L1A6NKN8 68 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 CXCL11O14625 94 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 CXCR3P49682 368 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 FBXO43Q4G163 708 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 PORCNQ9H237 461 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 SNX15Q9NRS6 342 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 C5orf60A6NFR6 353 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 ALG10Q5BKT4 473 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 CERCAMQ5T4B2 595 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 STRADAQ7RTN6 431 aa15.39■□□□□ 0.05
HCFC1-201ENST00000310441 GLB1L3Q8NCI6 653 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms