RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FAM71AQ8IYT1 594 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 PPM1MQ96MI6 270 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 TULP4Q9NRJ4 1543 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 GJB6O95452 261 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 CAP2P40123 477 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 PGM5Q15124 567 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 NOL9Q5SY16 702 aaKnown RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 RAET1GQ6H3X3 334 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 TCEAL6Q6IPX3 200 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 PPP1R13LQ8WUF5 828 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 DEFB129Q9H1M3 183 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 LRTM1Q9HBL6 345 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 HMGXB4Q9UGU5 601 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 ZNHIT2Q9UHR6 403 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF490Q9ULM2 529 aaPredicted RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 NEXMIFQ5QGS0 1516 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 hCG_1818297A0A087WSY0 165 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 MOXD2PA6NHM9 499 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 H0Y858 1186 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 M0R036 132 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 IFNW1P05000 195 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 FGF1P05230 155 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 AMD1P17707 334 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 BDNFP23560 247 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 RHEBQ15382 184 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 KLHL22Q53GT1 634 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 PRAMEF17Q5VTA0 474 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 UNC93AQ86WB7 457 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 ERI1Q8IV48 349 aaKnown RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 GALNT6Q8NCL4 622 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 CXorf40BQ96DE9 158 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 CEP295NLQ96MC4 621 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 HACL1Q9UJ83 578 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 TLL2Q9Y6L7 1015 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF208O43345 1280 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 DBIP07108 87 aaKnown RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 TCF25Q9BQ70 676 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 AARSD1Q9BTE6 412 aaKnown RBP13.8□□□□□ -0.2
CSPG4-201ENST00000308508 TMEM27Q9HBJ8 222 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 SLC17A7Q9P2U7 560 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 DNMT3LQ9UJW3 386 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 VWA7Q9Y334 891 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 PRKAB1Q9Y478 270 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 FKBP7Q9Y680 259 aa13.8□□□□□ -0.2
CSPG4-201ENST00000308508 H3BRB1 525 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 M0QX08 132 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 TBX1O43435 398 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 PRAMEF1O95521 474 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 ALDH4A1P30038 563 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 GNPDA1P46926 289 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 PSEN1P49768 467 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 TXNL4AP83876 142 aaKnown RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 MXD1Q05195 221 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 TUT1Q9H6E5 874 aaKnown RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SMPD4Q9NXE4 827 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 LRRC10BA6NIK2 292 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 HCN1O60741 890 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 ERBB2P04626 1255 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 BACE1P56817 501 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 REP15Q6BDI9 236 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 HDDC3Q8N4P3 179 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 MRPS33Q9Y291 106 aaKnown RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 TMEM5Q9Y2B1 443 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 A0A087X0B3 334 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 C5orf51A6NDU8 294 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 ZNF99A8MXY4 864 aaPredicted RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 OR1I1O60431 355 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 KCNA5P22460 613 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SLC6A4P31645 630 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 ABL2P42684 1182 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 PCDH1Q08174 1060 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 CTBP1Q13363 440 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 PABPC1LQ4VXU2 614 aaKnown RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 FBXL16Q8N461 479 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 ANKRD52Q8NB46 1076 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 HEXDCQ8WVB3 486 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 XYLBO75191 536 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 GNRH1P01148 92 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 ACSL1P33121 698 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 TMEM44Q2T9K0 475 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SLC39A12Q504Y0 691 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SPATA6LQ8N4H0 392 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 VANGL1Q8TAA9 524 aaPredicted RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SUSD6Q92537 303 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SGK2Q9HBY8 427 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 IPO13O94829 963 aaKnown RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 BBS12Q6ZW61 710 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 MAP4K3Q8IVH8 894 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 PIGXQ8TBF5 258 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 C15orf40Q8WUR7 153 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SNRNP25Q9BV90 132 aaKnown RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 UCKL1Q9NWZ5 548 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 TNFSF13BQ9Y275 285 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 CFL2Q9Y281 166 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 SLC27A6Q9Y2P4 619 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 EME2A4GXA9 379 aaPredicted RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 CSTF1Q05048 431 aaKnown RBP13.79□□□□□ -0.2
CSPG4-201ENST00000308508 CBLBQ13191 982 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 MFSD10Q14728 455 aa13.79□□□□□ -0.2
CSPG4-201ENST00000308508 PLEKHG4Q58EX7 1191 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms