RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 PEX1O43933 1283 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 NRP2O60462 931 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 PGLSO95336 258 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 CTPS1P17812 591 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 CHRM3P20309 590 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 GPX3P22352 226 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 CAPRIN2Q6IMN6 1127 aaKnown RBP23.78■■□□□ 1.4
TRIM54-201ENST00000296098 PAOXQ6QHF9 649 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 EEF1AKMT1Q8WVE0 214 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 GATA6Q92908 595 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 TBRG4Q969Z0 631 aaKnown RBP eCLIP23.78■■□□□ 1.4
TRIM54-201ENST00000296098 ASB9Q96DX5 294 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 EBF3Q9H4W6 596 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 TMCO1Q9UM00 188 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 ATP11BQ9Y2G3 1177 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 SLC30A1Q9Y6M5 507 aa23.78■■□□□ 1.4
TRIM54-201ENST00000296098 NCF1BA6NI72 391 aaPredicted RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 NCF1CA8MVU1 366 aaPredicted RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 E7ENX8 843 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 K7ERQ8 282 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 TEX28O15482 410 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 CRCPO75575 148 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 NCF1P14598 390 aaPredicted RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 TCN1P20061 433 aaPredicted RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 RFC2P35250 354 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 HMGCLP35914 325 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 MNX1P50219 401 aaPredicted RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 OGFRL1Q5TC84 451 aaPredicted RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 RETSATQ6NUM9 610 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 HACD2Q6Y1H2 254 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 PHYKPLQ8IUZ5 450 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 CMTR2Q8IYT2 770 aaKnown RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 ZNF483Q8TF39 744 aaPredicted RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 TUBB1Q9H4B7 451 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 SPAG4Q9NPE6 437 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 TMEM39AQ9NV64 488 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 BTRCQ9Y297 605 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 GPR39O43194 453 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 ALPIP09923 528 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 AQP4P55087 323 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 CYP4F8P98187 520 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 GRAMD1BQ3KR37 738 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 FBXO48Q5FWF7 155 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 UGT3A1Q6NUS8 523 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 CPNE9Q8IYJ1 553 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 APCDD1Q8J025 514 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 FAM156AQ8NDB6 213 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 DDI1Q8WTU0 396 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 P2RY12Q9H244 342 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 SARS2Q9NP81 518 aaKnown RBP23.77■■□□□ 1.4
TRIM54-201ENST00000296098 DLGAP2Q9P1A6 1054 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 POLG2Q9UHN1 485 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 PCTPQ9UKL6 214 aa23.77■■□□□ 1.4
TRIM54-201ENST00000296098 DPPA5A6NC42 116 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 BBIP1A8MTZ0 92 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 SNX2O60749 519 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 VPS4BO75351 444 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 PRAMEF12O95522 483 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 SPATA31D3P0C874 917 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 GABRR2P28476 465 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 ATXN3P54252 364 aaPredicted RBP23.76■■□□□ 1.39
TRIM54-201ENST00000296098 SPATA31D4Q6ZUB0 917 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 GPSM1Q86YR5 675 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 CAMK1DQ8IU85 385 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 OR6K2Q8NGY2 324 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 PIH1D2Q8WWB5 315 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 TUBGCP3Q96CW5 907 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 EID2BQ96D98 161 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.76■■□□□ 1.39
TRIM54-201ENST00000296098 EPS15L1Q9UBC2 864 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 GIMAP2Q9UG22 337 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 A0A1B0GTL3 188 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 TRIM24O15164 1050 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 MLYCDO95822 493 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 LBPP18428 481 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 AGTR2P50052 363 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 GRB7Q14451 532 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 FUNDC1Q8IVP5 155 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 MIER2Q8N344 545 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 MRPS31Q92665 395 aaKnown RBP23.76■■□□□ 1.39
TRIM54-201ENST00000296098 NUSAP1Q9BXS6 441 aaKnown RBP23.76■■□□□ 1.39
TRIM54-201ENST00000296098 CROTQ9UKG9 612 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 PCDHB1Q9Y5F3 818 aa23.76■■□□□ 1.39
TRIM54-201ENST00000296098 CARNS1A5YM72 827 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 CKMP06732 381 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 LINC00032P0C843 101 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 RPL26P61254 145 aaKnown RBP23.75■■□□□ 1.39
TRIM54-201ENST00000296098 ADGRE1Q14246 886 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 C1orf53Q5VUE5 145 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 CERS6Q6ZMG9 384 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 EFL1Q7Z2Z2 1120 aaKnown RBP23.75■■□□□ 1.39
TRIM54-201ENST00000296098 SPATA24Q86W54 205 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 TMEM126BQ8IUX1 230 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 LRGUKQ96M69 825 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 CD274Q9NZQ7 290 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 EVLQ9UI08 416 aaPredicted RBP23.75■■□□□ 1.39
TRIM54-201ENST00000296098 DTNAQ9Y4J8 743 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 ASB3Q9Y575 518 aa23.75■■□□□ 1.39
TRIM54-201ENST00000296098 A0A0J9YYE9 177 aa23.74■■□□□ 1.39
TRIM54-201ENST00000296098 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms