RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MAN2A1Q16706 1144 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MEP1AQ16819 746 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TUSC1Q2TAM9 212 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TCHHL1Q5QJ38 904 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ATF7IP2Q5U623 682 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SH3RF1Q7Z6J0 888 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DCP1BQ8IZD4 617 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 FUKQ8N0W3 1084 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CADM3Q8N126 398 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SFRP1Q8N474 314 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF671Q8TAW3 534 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PYDC1Q8WXC3 89 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MS4A14Q96JA4 679 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 C17orf75Q9HAS0 396 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ENOPH1Q9UHY7 261 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SLC30A1Q9Y6M5 507 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DSCAML1Q8TD84 2053 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NUP155O75694 1391 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NKRFO15226 690 aaKnown RBP eCLIP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF185O15231 689 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 BGNP21810 368 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CDH12P55289 794 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SNAP25P60880 206 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SIGLEC14Q08ET2 396 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SNTB2Q13425 540 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PDIK1LQ8N165 341 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TLR10Q9BXR5 811 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MAU2Q9Y6X3 613 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SLC9A3R1O14745 358 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CST8O60676 142 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MED6O75586 246 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 TGM1P22735 817 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MDH1P40925 334 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MLLT6P55198 1093 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 BIDP55957 195 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 RELAQ04206 551 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MTF1Q14872 753 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 HAGHLQ6PII5 290 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CRYBG2Q8N1P7 616 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 C18orf8Q96DM3 657 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SEMA6AQ9H2E6 1030 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CDHR5Q9HBB8 845 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 S100A14Q9HCY8 104 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MYEF2Q9P2K5 600 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 AGO2Q9UKV8 859 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 KCNH4Q9UQ05 1017 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PCDHB14Q9Y5E9 798 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SORL1Q92673 2214 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MYO5BQ9ULV0 1848 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 UBXN7O94888 489 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF202O95125 648 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 HTR3BO95264 441 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CSTBP04080 98 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 BRAFP15056 766 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NPY2RP49146 381 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DGKQP52824 942 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MAPK12P53778 367 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DEFA1P59665 94 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DEFA3P59666 94 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DMP1Q13316 513 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 POLD3Q15054 466 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 LGSNQ5TDP6 509 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SPATA20Q8TB22 786 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CYGBQ8WWM9 190 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF578Q96N58 590 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 UNC93B1Q9H1C4 597 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GGNBP2Q9H3C7 697 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MS4A5Q9H3V2 200 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SUV39H2Q9H5I1 410 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 FAM207AQ9NSI2 230 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 HCN2Q9UL51 889 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 WDR33Q9C0J8 1336 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NCOR2Q9Y618 2525 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SAC3D1A6NKF1 404 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 M0QYV0 167 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NSFP46459 744 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SLC5A3P53794 718 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 IRX4P78413 519 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NTRK2Q16620 822 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 LSM12Q3MHD2 195 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PHYHD1Q5SRE7 291 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 C18orf63Q68DL7 685 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 CATSPERGQ6ZRH7 1159 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 STOX1Q6ZVD7 989 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ADCK2Q7Z695 626 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SULF2Q8IWU5 870 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 KIAA0895Q8NCT3 520 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 OR10T2Q8NGX3 314 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 OIT3Q8WWZ8 545 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 BSNDQ8WZ55 320 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 COPS5Q92905 334 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 NXPE3Q969Y0 559 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 SEC16BQ96JE7 1060 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF333Q96JL9 665 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MEGF10Q96KG7 1140 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 PYM1Q9BRP8 204 aaKnown RBP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 GANQ9H2C0 597 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.56□□□□□ -1.84
SCN1A-221ENST00000641996 ZNF69Q9UC07 566 aa3.56□□□□□ -1.84
SCN1A-221ENST00000641996 DNAJC12Q9UKB3 198 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms