RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CCDC157Q569K6 752 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 C6orf132Q5T0Z8 1188 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 KCTD16Q68DU8 428 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 DENND5AQ6IQ26 1287 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 TAF8Q7Z7C8 310 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 TRIM74Q86UV6 250 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 PNPLA1Q8N8W4 532 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 DTX3LQ8TDB6 740 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 ACTRT1Q8TDG2 376 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 ADAMTS14Q8WXS8 1223 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 SCARF2Q96GP6 870 aaPredicted RBP20.55■□□□□ 0.88
CLN3-240ENST00000631023 TMEM168Q9H0V1 697 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 RAB6BQ9NRW1 208 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 VPS18Q9P253 973 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 GAS8O95995 478 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 CKMT1AP12532 417 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 ACP1P24666 158 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 PMLP29590 882 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 KCNJ1P48048 391 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 RPIAP49247 311 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 ILKQ13418 452 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 TCEA2Q15560 299 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 COG1Q8WTW3 980 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 GLYATL1Q969I3 302 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 MAGOHBQ96A72 148 aaKnown RBP20.55■□□□□ 0.88
CLN3-240ENST00000631023 SUDS3Q9H7L9 328 aaPredicted RBP20.55■□□□□ 0.88
CLN3-240ENST00000631023 RMI1Q9H9A7 625 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 IL26Q9NPH9 171 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 ARL5AQ9Y689 179 aa20.55■□□□□ 0.88
CLN3-240ENST00000631023 GOLGA6L10A0A0M3HER8 536 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 CELA2BP08218 269 aaPredicted RBP20.54■□□□□ 0.88
CLN3-240ENST00000631023 RPL22P35268 128 aaKnown RBP20.54■□□□□ 0.88
CLN3-240ENST00000631023 ILF3Q12906 894 aaKnown RBP eCLIP20.54■□□□□ 0.88
CLN3-240ENST00000631023 PEX6Q13608 980 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 GALNT13Q8IUC8 556 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 PHYKPLQ8IUZ5 450 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 C19orf43Q9BQ61 176 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 BOCQ9BWV1 1114 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 AP1M1Q9BXS5 423 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 GSDMCQ9BYG8 508 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 TRIM39Q9HCM9 518 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 GPSM3Q9Y4H4 160 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 PLXNB3Q9ULL4 1909 aa20.54■□□□□ 0.88
CLN3-240ENST00000631023 UNC13CQ8NB66 2214 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 GLYATL1P3A0A0U1RQE8 302 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 BUD23O43709 281 aaKnown RBP20.53■□□□□ 0.88
CLN3-240ENST00000631023 RFPL3O75679 317 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 DKK1O94907 266 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 FUCA1P04066 466 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 ZSCAN5DPP0CG00 497 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 ACADVLP49748 655 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 SEMA5AQ13591 1074 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 ITGA9Q13797 1035 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 DNAAF3Q8N9W5 541 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 GPBAR1Q8TDU6 330 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 VPS35Q96QK1 796 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 OR2M4Q96R27 311 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 KCND1Q9NSA2 647 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 ZNHIT2Q9UHR6 403 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 APPL1Q9UKG1 709 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 GPR34Q9UPC5 381 aa20.53■□□□□ 0.88
CLN3-240ENST00000631023 CTAGE9A4FU28 777 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 GPR89AB7ZAQ6 455 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 APRTP07741 180 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 GPR89BP0CG08 455 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 ADCY8P40145 1251 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 HADHAP40939 763 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 CDH17Q12864 832 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 MSLNQ13421 630 aaPredicted RBP20.52■□□□□ 0.88
CLN3-240ENST00000631023 NR0B2Q15466 257 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 PYCR3Q53H96 274 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 PPP1R21Q6ZMI0 780 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 MARK2Q7KZI7 788 aaKnown RBP20.52■□□□□ 0.88
CLN3-240ENST00000631023 RAB44Q7Z6P3 723 aaPredicted RBP20.52■□□□□ 0.88
CLN3-240ENST00000631023 PRUNE1Q86TP1 453 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 GLIS1Q8NBF1 620 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 FAM46DQ8NEK8 389 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 OR4K2Q8NGD2 314 aa20.52■□□□□ 0.88
CLN3-240ENST00000631023 NAPGQ99747 312 aaPredicted RBP20.52■□□□□ 0.88
CLN3-240ENST00000631023 OAS3Q9Y6K5 1087 aaKnown RBP20.52■□□□□ 0.88
CLN3-240ENST00000631023 SUN1O94901 812 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 TPH1P17752 444 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 E2F1Q01094 437 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 LRP8Q14114 963 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 CYP1B1Q16678 543 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 ATP13A5Q4VNC0 1218 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 FAM151BQ6UXP7 276 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 CHCHD4Q8N4Q1 142 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 GDAP1Q8TB36 358 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 PTCD2Q8WV60 388 aaKnown RBP20.51■□□□□ 0.87
CLN3-240ENST00000631023 ANGPTL2Q9UKU9 493 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 SPEGQ15772 3267 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 ZNF185O15231 689 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 DNAJC6O75061 913 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 SHC2P98077 582 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 LAMB3Q13751 1172 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 CHRNA6Q15825 494 aa20.51■□□□□ 0.87
CLN3-240ENST00000631023 PAPD7Q5XG87 772 aaKnown RBP20.51■□□□□ 0.87
CLN3-240ENST00000631023 CCDC137Q6PK04 289 aaKnown RBP20.51■□□□□ 0.87
CLN3-240ENST00000631023 ARL10Q8N8L6 244 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms