RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SPASTQ9UBP0 616 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 FKBPLQ9UIM3 349 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 BTBD3Q9Y2F9 522 aa20.15■□□□□ 0.82
PTCD3-220ENST00000627371 HEATR9A2RTY3 570 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 MROH6A6NGR9 719 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 TNFP01375 233 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 CSRP1P21291 193 aaKnown RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 TERF1P54274 439 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 LAMB3Q13751 1172 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 ITGA9Q13797 1035 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 DHX34Q14147 1143 aaKnown RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 PUM1Q14671 1186 aaKnown RBP eCLIP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 CHRNA6Q15825 494 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 ATP13A5Q4VNC0 1218 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 ANKRD22Q5VYY1 191 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 LRRC8BQ6P9F7 803 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 DOK6Q6PKX4 331 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 ZNF572Q7Z3I7 529 aaPredicted RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 PHYKPLQ8IUZ5 450 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 SLC25A45Q8N413 288 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 SETD7Q8WTS6 366 aaKnown RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 STYXQ8WUJ0 223 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 SCARF2Q96GP6 870 aaPredicted RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 DNAJC1Q96KC8 554 aaKnown RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 CYP4F12Q9HCS2 524 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 VPS18Q9P253 973 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 ASIC3Q9UHC3 531 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 CDC23Q9UJX2 597 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 APPL1Q9UKG1 709 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 PCOLCE2Q9UKZ9 415 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 OAS3Q9Y6K5 1087 aaKnown RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 CSNK1G3Q9Y6M4 447 aa20.14■□□□□ 0.81
PTCD3-220ENST00000627371 GOLGA4Q13439 2230 aaKnown RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 ARHGEF17Q96PE2 2063 aaPredicted RBP20.14■□□□□ 0.81
PTCD3-220ENST00000627371 AQP9O43315 295 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 URI1O94763 535 aaPredicted RBP20.13■□□□□ 0.81
PTCD3-220ENST00000627371 TMEM63AO94886 807 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 PRAMEF1O95521 474 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 IVLP07476 585 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 ADRA1DP25100 572 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 PSMA3P25788 255 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 ID4P47928 161 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 SARNPP82979 210 aaKnown RBP20.13■□□□□ 0.81
PTCD3-220ENST00000627371 CCDC38Q502W7 563 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 PRRT3Q5FWE3 981 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 RD3Q7Z3Z2 195 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 JAMLQ86YT9 394 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 FSTL5Q8N475 847 aaPredicted RBP20.13■□□□□ 0.81
PTCD3-220ENST00000627371 BAHD1Q8TBE0 780 aaPredicted RBP20.13■□□□□ 0.81
PTCD3-220ENST00000627371 LMX1AQ8TE12 382 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 ZNF592Q92610 1267 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 CAMK1GQ96NX5 476 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 KRT12Q99456 494 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 SLC32A1Q9H598 525 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 NLE1Q9NVX2 485 aaPredicted RBP20.13■□□□□ 0.81
PTCD3-220ENST00000627371 SMOXQ9NWM0 555 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 MOSPD1Q9UJG1 213 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 TMPRSS11EQ9UL52 423 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 SUFUQ9UMX1 484 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 TMEM98Q9Y2Y6 226 aa20.13■□□□□ 0.81
PTCD3-220ENST00000627371 NEMP2A6NFY4 417 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 H7C0S8 307 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 SCAMP1O15126 338 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 CBFA2T3O75081 653 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 SRP72O76094 671 aaKnown RBP20.12■□□□□ 0.81
PTCD3-220ENST00000627371 SLC25A14O95258 325 aaPredicted RBP20.12■□□□□ 0.81
PTCD3-220ENST00000627371 FUCA1P04066 466 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 CTSEP14091 401 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 ADCY8P40145 1251 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 POLD2P49005 469 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 SESN2P58004 480 aaPredicted RBP20.12■□□□□ 0.81
PTCD3-220ENST00000627371 TMPRSS15P98073 1019 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 XIAPP98170 497 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 CKAP4Q07065 602 aaKnown RBP20.12■□□□□ 0.81
PTCD3-220ENST00000627371 PEX6Q13608 980 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 PPIL6Q8IXY8 311 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 NAT8LQ8N9F0 302 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 MCUQ8NE86 351 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 DEFB124Q8NES8 71 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 RHBDD1Q8TEB9 315 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 PTCD2Q8WV60 388 aaKnown RBP20.12■□□□□ 0.81
PTCD3-220ENST00000627371 IL22Q9GZX6 179 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 CARS2Q9HA77 564 aaKnown RBP20.12■□□□□ 0.81
PTCD3-220ENST00000627371 BFARQ9NZS9 450 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 RIMKLBQ9ULI2 386 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 TCAF1Q9Y4C2 921 aa20.12■□□□□ 0.81
PTCD3-220ENST00000627371 DCDC2BA2VCK2 349 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 DNALI1O14645 258 aaPredicted RBP20.11■□□□□ 0.81
PTCD3-220ENST00000627371 TTI1O43156 1089 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 GPR39O43194 453 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 ASMTLO95671 621 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 GIMD1P0DJR0 217 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 NPY2RP49146 381 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 C2orf54Q08AI8 447 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 C1orf61Q13536 156 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 ELOCQ15369 112 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 SKIDA1Q1XH10 827 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 RNASEH2BQ5TBB1 312 aaKnown RBP20.11■□□□□ 0.81
PTCD3-220ENST00000627371 NLRP9Q7RTR0 991 aa20.11■□□□□ 0.81
PTCD3-220ENST00000627371 EID2Q8N6I1 236 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms