RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 C22orf31O95567 290 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 MAPK9P45984 424 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 CDK9P50750 372 aaKnown RBP13.95□□□□□ -0.18
CPSF1-212ENST00000616140 PITRM1Q5JRX3 1037 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 ZNF544Q6NX49 715 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 METTL3Q86U44 580 aaKnown RBP13.95□□□□□ -0.18
CPSF1-212ENST00000616140 RASAL3Q86YV0 1011 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 MPP5Q8N3R9 675 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 UBR7Q8N806 425 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 PNPT1Q8TCS8 783 aaKnown RBP13.95□□□□□ -0.18
CPSF1-212ENST00000616140 IGSF9Q9P2J2 1179 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 CCDC189A1A4V9 331 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 OR6B1O95007 311 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 NUDT14O95848 222 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 RPL3P39023 403 aaKnown RBP13.95□□□□□ -0.18
CPSF1-212ENST00000616140 GSTM5P46439 218 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 HSPA7P48741 367 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 THOP1P52888 689 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 MED22Q15528 200 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 SOWAHAQ2M3V2 549 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 ZNF671Q8TAW3 534 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 IRGQQ8WZA9 623 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 PSMG2Q969U7 264 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 SLC47A1Q96FL8 570 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 ACBD6Q9BR61 282 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 CACNG4Q9UBN1 327 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 EVLQ9UI08 416 aaPredicted RBP13.95□□□□□ -0.18
CPSF1-212ENST00000616140 MRPS23Q9Y3D9 190 aaKnown RBP13.95□□□□□ -0.18
CPSF1-212ENST00000616140 MYH10P35580 1976 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 ZNF536O15090 1300 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 UBXN8O00124 270 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 TRMUO75648 421 aaKnown RBP13.95□□□□□ -0.18
CPSF1-212ENST00000616140 IL6P05231 212 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 UGT2B4P06133 528 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 TACR2P21452 398 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 CORO1AP31146 461 aaKnown RBP13.95□□□□□ -0.18
CPSF1-212ENST00000616140 AQP4P55087 323 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 ITGA7Q13683 1181 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 PAOXQ6QHF9 649 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 CERS6Q6ZMG9 384 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 SLC24A5Q71RS6 500 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 PAGE2Q7Z2X7 111 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 PPP1R16AQ96I34 528 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 GORASP1Q9BQQ3 440 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 KIF1AQ12756 1690 aa13.95□□□□□ -0.18
CPSF1-212ENST00000616140 CXorf49A8MYA2 514 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 FANCGO15287 622 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 PBX3P40426 434 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 GALK1P51570 392 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 ACTR3P61158 418 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 GNA12Q03113 381 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SYPL2Q5VXT5 272 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 CIR1Q86X95 450 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 BTBD9Q96Q07 612 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 AARSD1Q9BTE6 412 aaKnown RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 CRISPLD1Q9H336 500 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 ALG2Q9H553 416 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 ZNF395Q9H8N7 513 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 CCNB1IP1Q9NPC3 277 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SMPD3Q9NY59 655 aaPredicted RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 FBXW11Q9UKB1 542 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 FZD10Q9ULW2 581 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SNPHO15079 494 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 MTHFRP42898 656 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SP3Q02447 781 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 GALNT5Q7Z7M9 940 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 FAM20CQ8IXL6 584 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 MAB21L3Q8N8X9 362 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 CXorf40AQ8TE69 158 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 LRTOMTQ8WZ04 291 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 FAIM2Q9BWQ8 316 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 ATG10Q9H0Y0 220 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 RAB26Q9ULW5 256 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 VPS4AQ9UN37 437 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 CORO2BQ9UQ03 480 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 PCDHB1Q9Y5F3 818 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SNED1Q8TER0 1413 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 NBNO60934 754 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 TMCC2O75069 709 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 JAK1P23458 1154 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 GAD2Q05329 585 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SLC9A5Q14940 896 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 ZSWIM7Q19AV6 140 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 RTL3Q8N8U3 475 aaKnown RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 ASZ1Q8WWH4 475 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 HMCESQ96FZ2 354 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 FAXDC2Q96IV6 333 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 EBF3Q9H4W6 596 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SLC9A8Q9Y2E8 581 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SDK1Q7Z5N4 2213 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 GLYATL1P3A0A0U1RQE8 302 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 TRBC1P01850 177 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SPATA31D3P0C874 917 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 RPS9P46781 194 aaKnown RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SRP54P61011 504 aaKnown RBP13.94□□□□□ -0.18
CPSF1-212ENST00000616140 OGDHQ02218 1023 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 GNA13Q14344 377 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 DDI2Q5TDH0 399 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 SPATA31D4Q6ZUB0 917 aa13.94□□□□□ -0.18
CPSF1-212ENST00000616140 ZFP28Q8NHY6 868 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms