RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 TAB3Q8N5C8 712 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 PDCD7Q8N8D1 485 aaKnown RBP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 CCDC89Q8N998 374 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 GPBAR1Q8TDU6 330 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 PTCD2Q8WV60 388 aaKnown RBP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 OR2M4Q96R27 311 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 GSDMCQ9BYG8 508 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 DRG1Q9Y295 367 aaKnown RBP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 OAS3Q9Y6K5 1087 aaKnown RBP16.72■□□□□ 0.27
TRIM28-215ENST00000601150 U3KQA8 63 aa16.72■□□□□ 0.27
TRIM28-215ENST00000601150 ARHGEF17Q96PE2 2063 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-215ENST00000601150 PLXNB3Q9ULL4 1909 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 CPED1A4D0V7 1026 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 C2orf81A6NN90 581 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 STX7O15400 261 aaKnown RBP16.71■□□□□ 0.27
TRIM28-215ENST00000601150 BUD23O43709 281 aaKnown RBP16.71■□□□□ 0.27
TRIM28-215ENST00000601150 SLC25A14O95258 325 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-215ENST00000601150 AP2A1O95782 977 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 LPOP22079 712 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-215ENST00000601150 FDFT1P37268 417 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 SPAM1P38567 509 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 ADCY8P40145 1251 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 E2F1Q01094 437 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 CCDC173Q0VFZ6 552 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 SMAD1Q15797 465 aaKnown RBP16.71■□□□□ 0.27
TRIM28-215ENST00000601150 MARK2Q7KZI7 788 aaKnown RBP16.71■□□□□ 0.27
TRIM28-215ENST00000601150 TMPRSS7Q7RTY8 843 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 GALNT13Q8IUC8 556 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 PHYKPLQ8IUZ5 450 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 RASGEF1CQ8N431 466 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 ARL10Q8N8L6 244 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 FAM46DQ8NEK8 389 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 CCL4L1Q8NHW4 92 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 IFI44Q8TCB0 444 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 DTX3LQ8TDB6 740 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 BRSK1Q8TDC3 778 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 GLYATL1Q969I3 302 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 RMI1Q9H9A7 625 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 IL26Q9NPH9 171 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 SIRPGQ9P1W8 387 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 GULP1Q9UBP9 304 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 KLK13Q9UKR3 277 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 GPSM3Q9Y4H4 160 aa16.71■□□□□ 0.27
TRIM28-215ENST00000601150 EME2A4GXA9 379 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-215ENST00000601150 FAM221BA6H8Z2 402 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 USP27XA6NNY8 438 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 ERI2A8K979 691 aaKnown RBP16.7■□□□□ 0.26
TRIM28-215ENST00000601150 CRTAMO95727 393 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 GP1BAP07359 652 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 PDE1BQ01064 536 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 PYCR3Q53H96 274 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 GUSBP11Q6P575 273 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 LINC00523Q86TU6 105 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 NRROSQ86YC3 692 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 PRELID2Q8N945 189 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 KYQ8NBH2 561 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 NAT6Q93015 286 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 VPS35Q96QK1 796 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 NAP1L3Q99457 506 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-215ENST00000601150 ETNK1Q9HBU6 452 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 TRIM39Q9HCM9 518 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 PAK5Q9P286 719 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 ZNHIT2Q9UHR6 403 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 TTC7AQ9ULT0 858 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-215ENST00000601150 PYCARDQ9ULZ3 195 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 PADI4Q9UM07 663 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 MSRB2Q9Y3D2 182 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 ARL5AQ9Y689 179 aa16.7■□□□□ 0.26
TRIM28-215ENST00000601150 GLYATL1P3A0A0U1RQE8 302 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 E7EVH7 732 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 DNAJC6O75061 913 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 ETS1P14921 441 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 LMAN1P49257 510 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 CTBSQ01459 385 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 MSLNQ13421 630 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-215ENST00000601150 PEX6Q13608 980 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 LRP8Q14114 963 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 ATP13A5Q4VNC0 1218 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 OGFOD3Q6PK18 319 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 FAM151BQ6UXP7 276 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 C4orf22Q6V702 233 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 GSTA5Q7RTV2 222 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 EFL1Q7Z2Z2 1120 aaKnown RBP16.69■□□□□ 0.26
TRIM28-215ENST00000601150 PRUNE1Q86TP1 453 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 TMPRSS12Q86WS5 348 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 MS4A14Q96JA4 679 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 OSBPL9Q96SU4 736 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 DPEP2Q9H4A9 486 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 RAB6BQ9NRW1 208 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 ATXN10Q9UBB4 475 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 SNX12Q9UMY4 172 aa16.69■□□□□ 0.26
TRIM28-215ENST00000601150 B4DGG1 531 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 GPR89AB7ZAQ6 455 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 PGRMC1O00264 195 aaKnown RBP16.68■□□□□ 0.26
TRIM28-215ENST00000601150 CES2O00748 559 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 VEGFDO43915 354 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 NUAK1O60285 661 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 ZSCAN5DPP0CG00 497 aa16.68■□□□□ 0.26
TRIM28-215ENST00000601150 GPR89BP0CG08 455 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms