RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 GLYATL1Q969I3 302 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 CDKN2AIPNLQ96HQ2 116 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 VPS35Q96QK1 796 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 MRM3Q9HC36 420 aaKnown RBP19.2■□□□□ 0.66
UPF1-209ENST00000600310 DNAJC28Q9NX36 388 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 KLF15Q9UIH9 416 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 TMPRSS11EQ9UL52 423 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 PNMA8BQ9ULN7 279 aaPredicted RBP19.2■□□□□ 0.66
UPF1-209ENST00000600310 SLC17A4Q9Y2C5 497 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 SNX24Q9Y343 169 aa19.2■□□□□ 0.66
UPF1-209ENST00000600310 CCDC78A2IDD5 438 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 SDR42E2A6NKP2 422 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 C4orf47A7E2U8 309 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 NDC80O14777 642 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 SRP72O76094 671 aaKnown RBP19.19■□□□□ 0.66
UPF1-209ENST00000600310 PRAMEF1O95521 474 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 ITGA8P53708 1063 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 SRP54P61011 504 aaKnown RBP19.19■□□□□ 0.66
UPF1-209ENST00000600310 CRADDP78560 199 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 PPARDQ03181 441 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 ACVR1Q04771 509 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 PEX6Q13608 980 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 ITGA9Q13797 1035 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 ZNF542PQ5EBM4 170 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 DUPD1Q68J44 220 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 TRIM74Q86UV6 250 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 ZNF398Q8TD17 642 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 TBATAQ96M53 351 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 ZNF778Q96MU6 729 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 KIFC1Q9BW19 673 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 RAB17Q9H0T7 212 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 FGF22Q9HCT0 170 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 CHRAC1Q9NRG0 131 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 TM7SF3Q9NS93 570 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 SMOXQ9NWM0 555 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 SYBUQ9NX95 663 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 KLQ9UEF7 1012 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 UTP11Q9Y3A2 253 aaKnown RBP19.19■□□□□ 0.66
UPF1-209ENST00000600310 PCDHGB2Q9Y5G2 931 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 DGKBQ9Y6T7 804 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 KNL1Q8NG31 2342 aa19.19■□□□□ 0.66
UPF1-209ENST00000600310 H3BM21 787 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 CCL22O00626 93 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 TP73O15350 636 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 PCDHGA12O60330 932 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A9O60656 530 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 SLC25A14O95258 325 aaPredicted RBP19.18■□□□□ 0.66
UPF1-209ENST00000600310 RASGRP1O95267 797 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 CEACAM5P06731 702 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 JUNDP17535 347 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A6P19224 532 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A1P22309 533 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A4P22310 534 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 EPHA8P29322 1005 aaPredicted RBP19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A3P35503 534 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A5P35504 534 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 BLKP51451 505 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 ARSDP51689 593 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 HK3P52790 923 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 HNRNPKP61978 463 aaKnown RBP eCLIP19.18■□□□□ 0.66
UPF1-209ENST00000600310 FOXK2Q01167 660 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 SLC14A1Q13336 389 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 KCTD16Q68DU8 428 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 C8orf74Q6P047 294 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 PHACTR4Q8IZ21 702 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 MPP5Q8N3R9 675 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 OR13J1Q8NGT2 312 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 NETO1Q8TDF5 533 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 OR1E3Q8WZA6 343 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 TSACCQ96A04 125 aaPredicted RBP19.18■□□□□ 0.66
UPF1-209ENST00000600310 SCARF2Q96GP6 870 aaPredicted RBP19.18■□□□□ 0.66
UPF1-209ENST00000600310 LRRC1Q9BTT6 524 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 ASB8Q9H765 288 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A7Q9HAW7 530 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A10Q9HAW8 530 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 UGT1A8Q9HAW9 530 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 TRIM39Q9HCM9 518 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 WHRNQ9P202 907 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 SLC2A6Q9UGQ3 507 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 ANAPC5Q9UJX4 755 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 SOX13Q9UN79 622 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 TMEM98Q9Y2Y6 226 aa19.18■□□□□ 0.66
UPF1-209ENST00000600310 OAS3Q9Y6K5 1087 aaKnown RBP19.18■□□□□ 0.66
UPF1-209ENST00000600310 GVINP1Q7Z2Y8 2422 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 SCN8AQ9UQD0 1980 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 PRSS38A1L453 326 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 MAGEB16A2A368 324 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 AGAP14A8MT82 685 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 PIAS2O75928 621 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 TNFP01375 233 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 IVLP07476 585 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 ITGALP20701 1170 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 MC4RP32245 332 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 CA5AP35218 305 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 IL9RQ01113 521 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 NFATC2Q13469 925 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 DBX2Q6ZNG2 339 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 SNX20Q7Z614 316 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 PHYKPLQ8IUZ5 450 aa19.17■□□□□ 0.66
UPF1-209ENST00000600310 HID1Q8IV36 788 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms