RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 DOK6Q6PKX4 331 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 WDR74Q6RFH5 385 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-212ENST00000597995 ARHGAP22Q7Z5H3 698 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 TSPAN33Q86UF1 283 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 FAM129CQ86XR2 697 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 PTRH1Q86Y79 214 aaKnown RBP12.43□□□□□ -0.42
TRIM28-212ENST00000597995 LRRC49Q8IUZ0 686 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 NRSN1Q8IZ57 195 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 SFRP1Q8N474 314 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 SLC37A2Q8TED4 501 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 KIAA1143Q96AT1 154 aaPredicted RBP12.43□□□□□ -0.42
TRIM28-212ENST00000597995 AP2M1Q96CW1 435 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 SLC38A3Q99624 504 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 FBXO8Q9NRD0 319 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 ABHD10Q9NUJ1 306 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 TMEM9Q9P0T7 183 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 ANAPC2Q9UJX6 822 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 TMEM98Q9Y2Y6 226 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 PLEKHM1Q9Y4G2 1056 aa12.43□□□□□ -0.42
TRIM28-212ENST00000597995 CBFA2T2O43439 604 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 FZD6O60353 706 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 MFAP3LO75121 409 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 PROSCO94903 275 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 TPM3P06753 285 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 SERPINB6P35237 376 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 CASRP41180 1078 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 TBX2Q13207 712 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-212ENST00000597995 TRIM14Q14142 442 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 DPYSL3Q14195 570 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 PTPRRQ15256 657 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-212ENST00000597995 LRRC66Q68CR7 880 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 CEACAM20Q6UY09 585 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 GALNT13Q8IUC8 556 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 NLGN4XQ8N0W4 816 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 ATPAF2Q8N5M1 289 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 TEX26Q8N6G2 289 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 NLGN4YQ8NFZ3 816 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-212ENST00000597995 EXD1Q8NHP7 514 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 SH3KBP1Q96B97 665 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 RTP4Q96DX8 246 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 COX14Q96I36 57 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 TRIT1Q9H3H1 467 aaKnown RBP12.42□□□□□ -0.42
TRIM28-212ENST00000597995 GPN2Q9H9Y4 310 aaPredicted RBP12.42□□□□□ -0.42
TRIM28-212ENST00000597995 SARS2Q9NP81 518 aaKnown RBP12.42□□□□□ -0.42
TRIM28-212ENST00000597995 VPS18Q9P253 973 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 CTTNBP2NLQ9P2B4 639 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 CD84Q9UIB8 345 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 DNPEPQ9ULA0 475 aa12.42□□□□□ -0.42
TRIM28-212ENST00000597995 ZFC3H1O60293 1989 aaKnown RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 A0A0J9YYE9 177 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 NKX2-8O15522 239 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 MFSD11O43934 449 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 TRBC1P01850 177 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 PDHA1P08559 390 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 H2AFZP0C0S5 128 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 TMEM253P0C7T8 217 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 CTPS1P17812 591 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 CES1P23141 567 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 SSR1P43307 286 aaKnown RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 STC1P52823 247 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 EPHA4P54764 986 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 FOXK1P85037 733 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 MC1RQ01726 317 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 HHEXQ03014 270 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 ABHD18Q0P651 414 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 UBAP2LQ14157 1087 aaKnown RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 IHHQ14623 411 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 SKIDA1Q1XH10 827 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 CRTC2Q53ET0 693 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 NCBP2-AS2Q69YL0 99 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 RFLNAQ6ZTI6 216 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 H2AFVQ71UI9 128 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 C9orf43Q8TAL5 461 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 SCAMP4Q969E2 229 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 POLR1EQ9GZS1 481 aaKnown RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 ZMYND15Q9H091 742 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 EPN3Q9H201 632 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 STN1Q9H668 368 aaKnown RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 SPTLC3Q9NUV7 552 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 RCOR3Q9P2K3 495 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 ANKMY1Q9P2S6 941 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 UVRAGQ9P2Y5 699 aa12.41□□□□□ -0.42
TRIM28-212ENST00000597995 TMEM184BQ9Y519 407 aaPredicted RBP12.41□□□□□ -0.42
TRIM28-212ENST00000597995 FLNCQ14315 2725 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 NBASA2RRP1 2371 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 TRBV23OR9-2A0A075B6M9 112 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 A8MU76 341 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 DNAJC6O75061 913 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 MAP3K6O95382 1288 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 SLC2A4P14672 509 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 GJC1P36383 396 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 PPM1FP49593 454 aaPredicted RBP12.4□□□□□ -0.42
TRIM28-212ENST00000597995 EPHB1P54762 984 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 CDC20Q12834 499 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 KRT81Q14533 505 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 PAFAH1B3Q15102 231 aaKnown RBP12.4□□□□□ -0.42
TRIM28-212ENST00000597995 ANKRD20A8PQ5CZ79 823 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 IYDQ6PHW0 289 aa12.4□□□□□ -0.42
TRIM28-212ENST00000597995 MARK2Q7KZI7 788 aaKnown RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms