RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NUS1Q96E22 293 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 DTD2Q96FN9 168 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 ABCG8Q9H221 673 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 CHRDQ9H2X0 955 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 FAM96AQ9H5X1 160 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 FBXO6Q9NRD1 293 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-209ENST00000597423 FAM53CQ9NYF3 392 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 MARCH4Q9P2E8 410 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-209ENST00000597423 TLK1Q9UKI8 766 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 ITM2BQ9Y287 266 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 VWA7Q9Y334 891 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 PCDHB1Q9Y5F3 818 aa15.16■□□□□ 0.02
TRIM28-209ENST00000597423 H3BMM5 538 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 APBB3O95704 486 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 ACRV1P26436 265 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 ADARP55265 1226 aaKnown RBP15.15■□□□□ 0.02
TRIM28-209ENST00000597423 SIGLEC14Q08ET2 396 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 USP10Q14694 798 aaKnown RBP15.15■□□□□ 0.02
TRIM28-209ENST00000597423 MAP7D1Q3KQU3 841 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 TTMPQ5BVD1 217 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 TJAP1Q5JTD0 557 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 EXOC3L1Q86VI1 746 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 SRRM1Q8IYB3 904 aaKnown RBP15.15■□□□□ 0.02
TRIM28-209ENST00000597423 NXPE1Q8N323 547 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 CAMKK1Q8N5S9 505 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 GPATCH11Q8N954 259 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 ASB12Q8WXK4 309 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 EDAQ92838 391 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 DCUN1D1Q96GG9 259 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 ELMO2Q96JJ3 720 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 COPS8Q99627 209 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 GPR22Q99680 433 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 RIOK2Q9BVS4 552 aaKnown RBP15.15■□□□□ 0.02
TRIM28-209ENST00000597423 CLPBQ9H078 707 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 BTBD1Q9H0C5 482 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 SSU72Q9NP77 194 aaKnown RBP15.15■□□□□ 0.02
TRIM28-209ENST00000597423 SMOXQ9NWM0 555 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 ZDHHC3Q9NYG2 299 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 SLC17A6Q9P2U8 582 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 CD84Q9UIB8 345 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 ANKRD36A6QL64 1941 aa15.15■□□□□ 0.02
TRIM28-209ENST00000597423 TRBV5-4A0A0C4DH59 114 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 FAM95CA0A1B0GW59 222 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 UBA6A0AVT1 1052 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-209ENST00000597423 IGLON5A6NGN9 336 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 AGAP14A8MT82 685 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 PRMT5O14744 637 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-209ENST00000597423 SPINT1O43278 529 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 ESR1P03372 595 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 BRAFP15056 766 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 KRT4P19013 534 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 UGT1A6P19224 532 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 UGT1A1P22309 533 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 UGT1A4P22310 534 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 GABRB3P28472 473 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 UGT1A3P35503 534 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 UGT1A5P35504 534 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 CCT5P48643 541 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 TPMTP51580 245 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 ADPRHP54922 357 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 TAS2R38P59533 333 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 AGERQ15109 404 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 SEPT7Q16181 437 aaKnown RBP15.14■□□□□ 0.01
TRIM28-209ENST00000597423 LDLRAP1Q5SW96 308 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 HENMT1Q5T8I9 393 aaKnown RBP15.14■□□□□ 0.01
TRIM28-209ENST00000597423 FAM45BPQ6NSW5 357 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 PSAPL1Q6NUJ1 521 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 UGT3A1Q6NUS8 523 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 CNSTQ6PJW8 725 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 LDB1Q86U70 411 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-209ENST00000597423 HORMAD1Q86X24 394 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 PIANPQ8IYJ0 282 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 DCLK2Q8N568 766 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 OR2T34Q8NGX1 318 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 GDAP1Q8TB36 358 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 FAM45AQ8TCE6 357 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 BTN2A2Q8WVV5 523 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 TSNARE1Q96NA8 513 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 VPS35Q96QK1 796 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 MCMBPQ9BTE3 642 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 SLC6A17Q9H1V8 727 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 CNOT10Q9H9A5 744 aaKnown RBP15.14■□□□□ 0.01
TRIM28-209ENST00000597423 KCNK9Q9NPC2 374 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 DCDC2Q9UHG0 476 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 SLC39A10Q9ULF5 831 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 SMG5Q9UPR3 1016 aaKnown RBP15.14■□□□□ 0.01
TRIM28-209ENST00000597423 CRYL1Q9Y2S2 319 aa15.14■□□□□ 0.01
TRIM28-209ENST00000597423 MTO1Q9Y2Z2 717 aaKnown RBP15.14■□□□□ 0.01
TRIM28-209ENST00000597423 A0A1W2PPM1 405 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 A0A1W2PQU0 124 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 H3BQF6 201 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 GAPDHSO14556 408 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 RNGTTO60942 597 aaKnown RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 IGLV3-19P01714 112 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 STMN1P16949 149 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 OAS2P29728 719 aaKnown RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 FMO4P31512 558 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 SKIV2L2P42285 1042 aaKnown RBP15.13■□□□□ 0.01
TRIM28-209ENST00000597423 NSG1P42857 185 aa15.13■□□□□ 0.01
TRIM28-209ENST00000597423 GPR1P46091 355 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms