RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 NEMP1O14524 444 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 RNASEH2AO75792 299 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 TTC4O95801 387 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 PRKCGP05129 697 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 POLBP06746 335 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 PAMP19021 973 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 VIPR1P32241 457 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 PHBP35232 272 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 ARHGEF7Q14155 803 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 FASTKD3Q14CZ7 662 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 TRMT10CQ7L0Y3 403 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 PGBD3Q8N328 593 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 UBLCP1Q8WVY7 318 aaPredicted RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 VOPP1Q96AW1 172 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 ZNF669Q96BR6 464 aaPredicted RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 SCRN2Q96FV2 425 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 SIGLEC10Q96LC7 697 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 C9orf72Q96LT7 481 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 HSPA12BQ96MM6 686 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 MCCC1Q96RQ3 725 aaPredicted RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 MKRN2Q9H000 416 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 CDC42EP4Q9H3Q1 356 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 VPS37BQ9H9H4 285 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 MRM3Q9HC36 420 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 ARFGAP3Q9NP61 516 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 PCDH12Q9NPG4 1184 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 TM7SF3Q9NS93 570 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 ANKMY1Q9P2S6 941 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 B4GALT6Q9UBX8 382 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 NCKAP1Q9Y2A7 1128 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 PKP3Q9Y446 797 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 SPO11Q9Y5K1 396 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 ITPR2Q14571 2701 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 CABIN1Q9Y6J0 2220 aa12.03□□□□□ -0.48
SHKBP1-213ENST00000597325 CREBBPQ92793 2442 aa12.02□□□□□ -0.48
SHKBP1-213ENST00000597325 LRBAP50851 2863 aa12.02□□□□□ -0.48
SHKBP1-213ENST00000597325 MYLKQ15746 1914 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 FAM237BA0A1B0GVD1 139 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 A0A1W2PP55 124 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 CCDC78A2IDD5 438 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 NPIPB15A6NHN6 443 aaPredicted RBP12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 GOLGA8CPA6NN73 597 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 SPAG6O75602 509 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 GSTA2P09210 222 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 GP1BBP13224 206 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 TIMP2P16035 220 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 TSHRP16473 764 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 ZNF30P17039 623 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 GABRG2P18507 467 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 NDUFV2P19404 249 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 LPOP22079 712 aaPredicted RBP12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 HNF1BP35680 557 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 MMP12P39900 470 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 METAP1P53582 386 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 CNTN1Q12860 1018 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 CBLBQ13191 982 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 RTP5Q14D33 572 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 SPANXN3Q5MJ09 141 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 DHRS13Q6UX07 377 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 CAPN12Q6ZSI9 719 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 DPPA4Q7L190 304 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 LYSMD3Q7Z3D4 306 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 TMPRSS12Q86WS5 348 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 SPACA3Q8IXA5 215 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 AADATQ8N5Z0 425 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 MRGPRX1Q96LB2 322 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 LYSMD1Q96S90 227 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 KIFC1Q9BW19 673 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 SLC6A17Q9H1V8 727 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 ZFYVE1Q9HBF4 777 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 FBXL12Q9NXK8 326 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 KCNK4Q9NYG8 393 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 NINJ2Q9NZG7 142 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 SUSD2Q9UGT4 822 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 BTBD3Q9Y2F9 522 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 FNDC3AQ9Y2H6 1198 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 PPIL1Q9Y3C6 166 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 PCDHGB2Q9Y5G2 931 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 ARL5AQ9Y689 179 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 RPS6KL1Q9Y6S9 549 aa12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 SPENQ96T58 3664 aaKnown RBP12.02□□□□□ -0.49
SHKBP1-213ENST00000597325 A8MX80 341 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 STX7O15400 261 aaKnown RBP12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 FLRT2O43155 660 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 SLC7A4O43246 635 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 USP1O94782 785 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 ACSL3O95573 720 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 ELFN1P0C7U0 828 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 H2AFXP16104 143 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 STX2P32856 288 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 DRD3P35462 400 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 BNC1Q01954 994 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 CRYMQ14894 314 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 SKIDA1Q1XH10 827 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 TSTD2Q5T7W7 516 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 PIP5KL1Q5T9C9 394 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 LRRC66Q68CR7 880 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 FBXO38Q6PIJ6 1188 aa12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.01□□□□□ -0.49
SHKBP1-213ENST00000597325 USP30Q70CQ3 517 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms