RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 WDR24Q96S15 920 aa9.88□□□□□ -0.83
LIG1-209ENST00000596104 RIOK2Q9BVS4 552 aaKnown RBP9.88□□□□□ -0.83
LIG1-209ENST00000596104 HSD3B7Q9H2F3 369 aa9.88□□□□□ -0.83
LIG1-209ENST00000596104 NT5MQ9NPB1 228 aa9.88□□□□□ -0.83
LIG1-209ENST00000596104 CNOT8Q9UFF9 292 aaKnown RBP9.88□□□□□ -0.83
LIG1-209ENST00000596104 MYO6Q9UM54 1294 aa9.88□□□□□ -0.83
LIG1-209ENST00000596104 KCNK6Q9Y257 313 aa9.88□□□□□ -0.83
LIG1-209ENST00000596104 TP53TG5Q9Y2B4 290 aa9.88□□□□□ -0.83
LIG1-209ENST00000596104 MRPS18BQ9Y676 258 aaKnown RBP9.88□□□□□ -0.83
LIG1-209ENST00000596104 KCNMB2Q9Y691 235 aa9.88□□□□□ -0.83
LIG1-209ENST00000596104 RPS6KL1Q9Y6S9 549 aa9.88□□□□□ -0.83
LIG1-209ENST00000596104 MN1Q10571 1320 aaPredicted RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 NOTCH2Q04721 2471 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 LILRA5A6NI73 299 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 DDX3XO00571 662 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIG1-209ENST00000596104 POLR1CO15160 346 aaPredicted RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 MTSS1O43312 755 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 ASMTLO95671 621 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 PRLP01236 227 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 FTLP02792 175 aaPredicted RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 ATP1A1P05023 1023 aaKnown RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 ANKRD34CP0C6C1 535 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 GZMAP12544 262 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 F3P13726 295 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 ZNF28P17035 718 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 NR1D1P20393 614 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 PPM1FP49593 454 aaPredicted RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 MYL5Q02045 173 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 KLRB1Q12918 225 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 BOLA3Q53S33 107 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 E4F1Q66K89 784 aaPredicted RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 TXNRD3NBQ6F5E7 133 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 ALG1LQ6GMV1 187 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 C16orf46Q6P387 395 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 CHST15Q7LFX5 561 aaPredicted RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 ZNF571Q7Z3V5 609 aaPredicted RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 KDELC2Q7Z4H8 507 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 RAVER1Q8IY67 606 aaKnown RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 NDUFAF2Q8N183 169 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 ESX1Q8N693 406 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 ANKRD20A12PQ8NF67 263 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 NSMCE1Q8WV22 266 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 HERPUD2Q9BSE4 406 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 TBC1D10AQ9BXI6 508 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 EPB41L1Q9H4G0 881 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 STN1Q9H668 368 aaKnown RBP9.87□□□□□ -0.83
LIG1-209ENST00000596104 PCDH18Q9HCL0 1135 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIG1-209ENST00000596104 OGFRQ9NZT2 677 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 CHMP5Q9NZZ3 219 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 KLHL3Q9UH77 587 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 ZNHIT2Q9UHR6 403 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 KCTD3Q9Y597 815 aa9.87□□□□□ -0.83
LIG1-209ENST00000596104 TEX15Q9BXT5 2789 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 KIR2DS5A0A0G2JLQ3 304 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 A0A0G2JNG1 304 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 BLACEA4D250 179 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 FADS2P1A8MWK0 482 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 KIR2DS3K7RE56 304 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 CLDN7O95471 211 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 C9P02748 559 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 FURINP09958 794 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 RARAP10276 462 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 ACP5P13686 325 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 IL4RP24394 825 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 SERPINB6P35237 376 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 MAPK9P45984 424 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 GFERP55789 205 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 UBE2IP63279 158 aaKnown RBP9.86□□□□□ -0.83
LIG1-209ENST00000596104 DSC2Q02487 901 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 SPTAN1Q13813 2472 aaKnown RBP9.86□□□□□ -0.83
LIG1-209ENST00000596104 SEPT6Q14141 434 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 KIR2DS5Q14953 304 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 HENMT1Q5T8I9 393 aaKnown RBP9.86□□□□□ -0.83
LIG1-209ENST00000596104 TCTN3Q6NUS6 607 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 LYSMD3Q7Z3D4 306 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 SLC9B2Q86UD5 537 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 PLXDC1Q8IUK5 500 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 LRRC49Q8IUZ0 686 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 ARRDC2Q8TBH0 407 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 TEKT4Q8WW24 435 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 MAML1Q92585 1016 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 HSPH1Q92598 858 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 ZNF653Q96CK0 615 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 C9orf72Q96LT7 481 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 PLEKHG4BQ96PX9 1271 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 LYSMD1Q96S90 227 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 TDRD1Q9BXT4 1180 aaKnown RBP9.86□□□□□ -0.83
LIG1-209ENST00000596104 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.86□□□□□ -0.83
LIG1-209ENST00000596104 POLR1EQ9GZS1 481 aaKnown RBP9.86□□□□□ -0.83
LIG1-209ENST00000596104 HAUS4Q9H6D7 363 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 RMI1Q9H9A7 625 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 CPNE7Q9UBL6 633 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 DNPEPQ9ULA0 475 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 CHKBQ9Y259 395 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 ADGRG1Q9Y653 693 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 SCINQ9Y6U3 715 aa9.86□□□□□ -0.83
LIG1-209ENST00000596104 LRRC53A6NM62 1247 aa9.85□□□□□ -0.83
LIG1-209ENST00000596104 OR5K4A6NMS3 321 aa9.85□□□□□ -0.83
LIG1-209ENST00000596104 MKRN2OSH3BPM6 223 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms