RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 CD82P27701 267 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 RPL22P35268 128 aaKnown RBP12.86□□□□□ -0.35
SCAF1-202ENST00000595242 VPS41P49754 854 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 MAPK10P53779 464 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 GDF10P55107 478 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 IFFO1Q0D2I5 559 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 GPS1Q13098 491 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 ERN2Q76MJ5 926 aaKnown RBP12.86□□□□□ -0.35
SCAF1-202ENST00000595242 CHSY1Q86X52 802 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 CIR1Q86X95 450 aaPredicted RBP12.86□□□□□ -0.35
SCAF1-202ENST00000595242 PPIL6Q8IXY8 311 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 SH2D3CQ8N5H7 860 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 NAT8LQ8N9F0 302 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 TMIEQ8NEW7 156 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.86□□□□□ -0.35
SCAF1-202ENST00000595242 TMEM159Q96B96 161 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 SLC39A13Q96H72 371 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 TTC25Q96NG3 672 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 SERPINB11Q96P15 392 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 KCTD15Q96SI1 283 aaPredicted RBP12.86□□□□□ -0.35
SCAF1-202ENST00000595242 LRRC61Q9BV99 259 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 CPEB1Q9BZB8 566 aaKnown RBP12.86□□□□□ -0.35
SCAF1-202ENST00000595242 GPATCH2LQ9NWQ4 482 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 SAE1Q9UBE0 346 aaPredicted RBP12.86□□□□□ -0.35
SCAF1-202ENST00000595242 ITPR3Q14573 2671 aa12.86□□□□□ -0.35
SCAF1-202ENST00000595242 CSMD1Q96PZ7 3565 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 E7ESA3 106 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 ZNF189O75820 626 aaPredicted RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 AGTP01019 485 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 ZSCAN5DPP0CG00 497 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 POU3F2P20265 443 aaPredicted RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 MAGEA6P43360 314 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 NR2C2P49116 596 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 LMAN1P49257 510 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 ZNF135P52742 658 aaPredicted RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 UBAP2Q5T6F2 1119 aaKnown RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 CXorf57Q6NSI4 855 aaKnown RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 KIAA1161Q6NSJ0 714 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 C4orf22Q6V702 233 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 PRUNE1Q86TP1 453 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 CDKL3Q8IVW4 592 aaPredicted RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 PHACTR4Q8IZ21 702 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 CCDC185Q8N715 623 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 ARL10Q8N8L6 244 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 DQX1Q8TE96 717 aaKnown RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 CPT1BQ92523 772 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 FAM149B1Q96BN6 582 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 ZBTB9Q96C00 473 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 ALG14Q96F25 216 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 FEM1CQ96JP0 617 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 CSPG4P5Q96PW8 444 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 KLF6Q99612 283 aaPredicted RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 CMKLR1Q99788 373 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 FEM1AQ9BSK4 669 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 TRIM62Q9BVG3 475 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 HDAC8Q9BY41 377 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 SLC13A1Q9BZW2 595 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 CLPBQ9H078 707 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 LRRN3Q9H3W5 708 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 DHX35Q9H5Z1 703 aaKnown RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 SIRPGQ9P1W8 387 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 PNMA8BQ9ULN7 279 aaPredicted RBP12.85□□□□□ -0.35
SCAF1-202ENST00000595242 HIVEP3Q5T1R4 2406 aa12.85□□□□□ -0.35
SCAF1-202ENST00000595242 F5H5T6 163 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 STMND1H3BQB6 276 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 APOEP02649 317 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 ETS1P14921 441 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 TSHRP16473 764 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 THOP1P52888 689 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 OXCT1P55809 520 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 ZFP36L1Q07352 338 aaKnown RBP12.84□□□□□ -0.35
SCAF1-202ENST00000595242 PTK2BQ14289 1009 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 FAXCQ5TGI0 409 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 TMEM164Q5U3C3 297 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 KCTD16Q68DU8 428 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 NPNTQ6UXI9 565 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 CCDC25Q86WR0 208 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 KYQ8NBH2 561 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 OR2A12Q8NGT7 310 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 TBATAQ96M53 351 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 SERPINB12Q96P63 405 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 OLFM3Q96PB7 478 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 QKIQ96PU8 341 aaKnown RBP eCLIP12.84□□□□□ -0.35
SCAF1-202ENST00000595242 RBM15Q96T37 977 aaKnown RBP eCLIP12.84□□□□□ -0.35
SCAF1-202ENST00000595242 CAPS2Q9BXY5 557 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 FRMD8Q9BZ67 464 aaPredicted RBP12.84□□□□□ -0.35
SCAF1-202ENST00000595242 STMN4Q9H169 189 aaPredicted RBP12.84□□□□□ -0.35
SCAF1-202ENST00000595242 TMEM51Q9NW97 253 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 PAK5Q9P286 719 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 SLC12A6Q9UHW9 1150 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 DOLKQ9UPQ8 538 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 NAALADL1Q9UQQ1 740 aa12.84□□□□□ -0.35
SCAF1-202ENST00000595242 PRRC2CQ9Y520 2896 aaKnown RBP12.84□□□□□ -0.35
SCAF1-202ENST00000595242 DOCK4Q8N1I0 1966 aa12.83□□□□□ -0.35
SCAF1-202ENST00000595242 TCAF2A6NFQ2 919 aa12.83□□□□□ -0.36
SCAF1-202ENST00000595242 HACD1B0YJ81 288 aa12.83□□□□□ -0.36
SCAF1-202ENST00000595242 H3BRJ5 948 aa12.83□□□□□ -0.36
SCAF1-202ENST00000595242 M0QYT0 321 aa12.83□□□□□ -0.36
SCAF1-202ENST00000595242 MT-CO1P00395 513 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms