RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 TEX101Q9BY14 249 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 BRD8Q9H0E9 1235 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 HAUS2Q9NVX0 235 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 GOLGA6AQ9NYA3 693 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 AMACRQ9UHK6 382 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 CD84Q9UIB8 345 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 PHTF1Q9UMS5 762 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 SUFUQ9UMX1 484 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 EFR3BQ9Y2G0 817 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 PPP2R2CQ9Y2T4 447 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 TMEM98Q9Y2Y6 226 aa12.45□□□□□ -0.42
UPF1-203ENST00000594504 TRBV23OR9-2A0A075B6M9 112 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 CAPN8A6NHC0 703 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 C9orf172C9J069 976 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 PDE2AO00408 941 aaPredicted RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 PPP1R12AO14974 1030 aaPredicted RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 NVLO15381 856 aaKnown RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 NUDT21O43809 227 aaKnown RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 LIPCP11150 499 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 WT1P19544 449 aaPredicted RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 MPSTP25325 297 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 CDK3Q00526 305 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 CTBSQ01459 385 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 IHHQ14623 411 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 RALGPS1Q5JS13 557 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 NKAIN2Q5VXU1 208 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 RAET1GQ6H3X3 334 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 DOK6Q6PKX4 331 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 SLC30A9Q6PML9 568 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 NPNTQ6UXI9 565 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 BBS12Q6ZW61 710 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 TECPR1Q7Z6L1 1165 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 PIM3Q86V86 326 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 C17orf82Q86X59 251 aaPredicted RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 CCDC13Q8IYE1 715 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 NAGSQ8N159 534 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 PIH1D2Q8WWB5 315 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 JPH3Q8WXH2 748 aaPredicted RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 P3H4Q92791 437 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 EXTL1Q92935 676 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 DTD2Q96FN9 168 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 HES6Q96HZ4 224 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 ALS2CR12Q96Q35 445 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 NUDT22Q9BRQ3 303 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 FRMD8Q9BZ67 464 aaPredicted RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 NT5MQ9NPB1 228 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 LZTFL1Q9NQ48 299 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 PHPT1Q9NRX4 125 aaPredicted RBP12.44□□□□□ -0.42
UPF1-203ENST00000594504 TAAR2Q9P1P5 351 aa12.44□□□□□ -0.42
UPF1-203ENST00000594504 RHPN2P1A8MT19 583 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 PPM1DO15297 605 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 DDX3YO15523 660 aaKnown RBP12.43□□□□□ -0.42
UPF1-203ENST00000594504 SOCS5O75159 536 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 PGLSO95336 258 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 CYP2A6P11509 494 aaPredicted RBP12.43□□□□□ -0.42
UPF1-203ENST00000594504 PECAM1P16284 738 aaPredicted RBP12.43□□□□□ -0.42
UPF1-203ENST00000594504 CD1CP29017 333 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 CYP4F2P78329 520 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 ADCY2Q08462 1091 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 ITKQ08881 620 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 LLGL1Q15334 1064 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 MAP9Q49MG5 647 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 MANEAQ5SRI9 462 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 FAM182AQ5T1J6 154 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 ALG1LQ6GMV1 187 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 TRIM74Q86UV6 250 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 SCAMP4Q969E2 229 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 PMEPA1Q969W9 287 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 SCRN2Q96FV2 425 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 AGAP2Q99490 1192 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 CMKLR1Q99788 373 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 HEMGNQ9BXL5 484 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 GSDMCQ9BYG8 508 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 OSBPL8Q9BZF1 889 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 POLR1EQ9GZS1 481 aaKnown RBP12.43□□□□□ -0.42
UPF1-203ENST00000594504 ABCG8Q9H221 673 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 RBM22Q9NW64 420 aaKnown RBP eCLIP12.43□□□□□ -0.42
UPF1-203ENST00000594504 ACSL6Q9UKU0 697 aa12.43□□□□□ -0.42
UPF1-203ENST00000594504 PACSIN2Q9UNF0 486 aaPredicted RBP12.43□□□□□ -0.42
UPF1-203ENST00000594504 IGHV5-10-1A0A0J9YXX1 117 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 A0A1W2PQ67 120 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 APOC4-APOC2K7ER74 178 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 KCNK1O00180 336 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 SLC28A2O43868 658 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 CPNE6O95741 557 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 SOD1P00441 154 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 APOC2P02655 101 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 PYGMP11217 842 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 CES1P23141 567 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 ADCY8P40145 1251 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 GPR1P46091 355 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 ARSDP51689 593 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 IFI35P80217 286 aaPredicted RBP12.42□□□□□ -0.42
UPF1-203ENST00000594504 NFKB2Q00653 900 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 PTSQ03393 145 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 AP1B1Q10567 949 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 ILF3Q12906 894 aaKnown RBP eCLIP12.42□□□□□ -0.42
UPF1-203ENST00000594504 NFATC3Q12968 1075 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 ARMC12Q5T9G4 340 aa12.42□□□□□ -0.42
UPF1-203ENST00000594504 CCDC181Q5TID7 509 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms