RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 RMDN1Q96DB5 314 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 SHDQ96IW2 340 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 DDX50Q9BQ39 737 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 MRPL9Q9BYD2 267 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 UNKQ9C0B0 810 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 EBF3Q9H4W6 596 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 TFB2MQ9H5Q4 396 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ACSS2Q9NR19 701 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 CCDC167Q9P0B6 97 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 UBA2Q9UBT2 640 aaPredicted RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 TMCO1Q9UM00 188 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ASB3Q9Y575 518 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 TMEM233B4DJY2 109 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 H3BNX3 289 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 DENRO43583 198 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 AHCYL1O43865 530 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 NRP2O60462 931 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ACSL4O60488 711 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 SOAT2O75908 522 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 FESP07332 822 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ATXN1LP0C7T5 689 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 FDXRP22570 491 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 PEX19P40855 299 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 CHN2P52757 468 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 STC1P52823 247 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 PLK1P53350 603 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 AQP4P55087 323 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 PKNOX1P55347 436 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 OXCT1P55809 520 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 GNA12Q03113 381 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 BFSP2Q13515 415 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 GRIN2CQ14957 1233 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 PDK3Q15120 406 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 KIF19Q2TAC6 998 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ZNF789Q5FWF6 425 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 AARS2Q5JTZ9 985 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ARTNQ5T4W7 220 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 SLC30A9Q6PML9 568 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 AFTPHQ6ULP2 937 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 NKAPQ8N5F7 415 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 MEIOBQ8N635 442 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 OR52K2Q8NGK3 314 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 OVCA2Q8WZ82 227 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 USP13Q92995 863 aaPredicted RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 C19orf60Q96EN9 201 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 MARK4Q96L34 752 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 CNTNAP3BQ96NU0 1288 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 PSKH2Q96QS6 385 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 NPAS2Q99743 824 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 CCT7Q99832 543 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 HOPXQ9BPY8 73 aaPredicted RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 CNTNAP3Q9BZ76 1288 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 TRIM15Q9C019 465 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ARHGAP39Q9C0H5 1083 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 PAPOLBQ9NRJ5 636 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 GID8Q9NWU2 228 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 CROTQ9UKG9 612 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 CNOT11Q9UKZ1 510 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ABT1Q9ULW3 272 aaKnown RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 NDUFAF1Q9Y375 327 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 MTF2Q9Y483 593 aaPredicted RBP7.38□□□□□ -1.23
ZNF540-206ENST00000589117 PATJQ8NI35 1801 aa7.38□□□□□ -1.23
ZNF540-206ENST00000589117 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 UBA6A0AVT1 1052 aaPredicted RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 MTMR11A4FU01 709 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 H0YJX3 145 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 MRASO14807 208 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 SMAD7O15105 426 aaKnown RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 SRP72O76094 671 aaKnown RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 RHOBTB1O94844 696 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 SORBS2O94875 1100 aaKnown RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 MLYCDO95822 493 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 JUNP05412 331 aaKnown RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 CD1DP15813 335 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 ZNF37AP17032 561 aaPredicted RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 XRCC1P18887 633 aaPredicted RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 TTPAP49638 278 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 SUOXP51687 545 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 CDKN2DP55273 166 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 SP3Q02447 781 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 ZNF177Q13360 481 aaPredicted RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 CEACAM7Q14002 265 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 ADGRE1Q14246 886 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 TAF1AQ15573 450 aaPredicted RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 TAF12Q16514 161 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 SPATS1Q496A3 300 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 SFT2D3Q587I9 215 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 UGT3A1Q6NUS8 523 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 KLHDC10Q6PID8 442 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 TXNDC11Q6PKC3 985 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 ANKRD49Q8WVL7 239 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 EME1Q96AY2 570 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 CDKN2AIPNLQ96HQ2 116 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 DNAJC1Q96KC8 554 aaKnown RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 ZNF512Q96ME7 567 aaPredicted RBP7.37□□□□□ -1.23
ZNF540-206ENST00000589117 HHIPQ96QV1 700 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 TTPALQ9BTX7 342 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 DERL2Q9GZP9 239 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 GSTO2Q9H4Y5 243 aa7.37□□□□□ -1.23
ZNF540-206ENST00000589117 SUDS3Q9H7L9 328 aaPredicted RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms