RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CTDSP2O14595 271 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 MAP2K7O14733 419 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 P4HA2O15460 535 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 MITFO75030 526 aaPredicted RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 GJB3O75712 270 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 PLGP00747 810 aaPredicted RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 LCATP04180 440 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 IL11P20809 199 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 HOXD3P31249 432 aaPredicted RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 HNRNPH1P31943 449 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 FASLGP48023 281 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 CLCN3P51790 818 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 PGGT1BP53609 377 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 PMS2P54278 862 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 PNLIPRP2P54317 469 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 RRP1P56182 461 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 DSC1Q08554 894 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 TRAF2Q12933 501 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 GRIK2Q13002 908 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 CTTNQ14247 550 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 MYBPC2Q14324 1141 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 PNLIPRP3Q17RR3 467 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 C2orf68Q2NKX9 166 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 FNBP1LQ5T0N5 605 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 RARS2Q5T160 578 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 KRT79Q5XKE5 535 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 FRG2Q64ET8 278 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 KCTD18Q6PI47 426 aaPredicted RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 TAOK1Q7L7X3 1001 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 CTU1Q7Z7A3 348 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 DNAAF5Q86Y56 855 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 MAGEC3Q8TD91 643 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 URB1-AS1Q96HZ7 61 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 SF3B5Q9BWJ5 86 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 TXLNGYQ9BZA5 131 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 DCLK3Q9C098 648 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 HRH4Q9H3N8 390 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 PPP1R3EQ9H7J1 279 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 C17orf75Q9HAS0 396 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 SELENONQ9NZV5 590 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 CPSF2Q9P2I0 782 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 CDC14AQ9UNH5 594 aa3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 R3HDM2Q9Y2K5 976 aaKnown RBP3.75□□□□□ -1.81
SMCHD1-209ENST00000583441 ATXN2Q99700 1313 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 OR2A25A4D2G3 310 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 GOLGA6L9A6NEM1 432 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 I6L893 689 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 HSPA12AO43301 675 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 RGS14O43566 566 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ENTPD3O75355 529 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ERAL1O75616 437 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 GAGE7O76087 117 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 NGFRP08138 427 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 CYC1P08574 325 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 GAGE12FP0CL80 117 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 GAGE12GP0CL81 117 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 GAGE12IP0CL82 117 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ACADLP28330 430 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 STX2P32856 288 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 AMTP48728 403 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 GPR143P51810 404 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 STAT2P52630 851 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 CSNK2A1P68400 391 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 IFI35P80217 286 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 DDR1Q08345 913 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 SREBF2Q12772 1141 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 GAGE1Q13065 139 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 GAGE4Q13068 117 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 FAM133BQ5BKY9 247 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ZNF805Q5CZA5 627 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ZNF324BQ6AW86 544 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ANKRD54Q6NXT1 300 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 C8orf82Q6P1X6 216 aaPredicted RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ZC3HC1Q86WB0 502 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 POMGNT2Q8NAT1 580 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 MCUQ8NE86 351 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 CSNK2A3Q8NEV1 391 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 B4GALNT2Q8NHY0 566 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 LRRC59Q96AG4 307 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ZNF479Q96JC4 524 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 PPP1R13BQ96KQ4 1090 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 FIZ1Q96SL8 496 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 KIFC3Q9BVG8 833 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 PDE7BQ9NP56 450 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 CNGB3Q9NQW8 809 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 ACSL5Q9ULC5 683 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 PPIEQ9UNP9 301 aaKnown RBP3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 CLIC4Q9Y696 253 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 RPS6KL1Q9Y6S9 549 aa3.74□□□□□ -1.81
SMCHD1-209ENST00000583441 C1orf226A1L170 272 aa3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 SH2B2O14492 632 aaPredicted RBP3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 ACOT8O14734 319 aa3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 TIMM23O14925 209 aa3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 ATP2A1O14983 1001 aa3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 SMAD9O15198 467 aaKnown RBP3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 ZIC3O60481 467 aa3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 CH25HO95992 272 aa3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 DNTTP04053 509 aa3.73□□□□□ -1.81
SMCHD1-209ENST00000583441 HOXB2P14652 356 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms